Variant report

Variant	rs8069903
Chromosome Location	chr17:59994623-59994624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:59993360..59995003-chr17:59995324..59997482,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10401014	1.00[EUR][1000 genomes]
rs16945750	1.00[EUR][1000 genomes]
rs28431006	1.00[EUR][1000 genomes]
rs4988342	1.00[EUR][1000 genomes]
rs58025472	1.00[EUR][1000 genomes]
rs58046635	1.00[EUR][1000 genomes]
rs59794823	1.00[EUR][1000 genomes]
rs6504075	1.00[EUR][1000 genomes]
rs6504076	1.00[EUR][1000 genomes]
rs6504078	1.00[EUR][1000 genomes]
rs7211128	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7212399	1.00[EUR][1000 genomes]
rs7212824	1.00[EUR][1000 genomes]
rs7212884	1.00[EUR][1000 genomes]
rs7213026	1.00[EUR][1000 genomes]
rs7217530	1.00[EUR][1000 genomes]
rs7221827	1.00[EUR][1000 genomes]
rs7222876	1.00[EUR][1000 genomes]
rs7224112	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7226248	1.00[EUR][1000 genomes]
rs73991952	1.00[EUR][1000 genomes]
rs8065060	1.00[EUR][1000 genomes]
rs8068267	1.00[EUR][1000 genomes]
rs8069386	1.00[EUR][1000 genomes]
rs8069946	1.00[EUR][1000 genomes]
rs8078342	1.00[EUR][1000 genomes]
rs8080298	0.82[AMR][1000 genomes]
rs9783837	0.81[AMR][1000 genomes]
rs9783841	1.00[EUR][1000 genomes]
rs9892063	1.00[EUR][1000 genomes]
rs9892123	1.00[EUR][1000 genomes]
rs9894718	1.00[EUR][1000 genomes]
rs9896768	1.00[EUR][1000 genomes]
rs9899042	1.00[EUR][1000 genomes]
rs9899780	1.00[EUR][1000 genomes]
rs9902699	1.00[EUR][1000 genomes]
rs9903562	1.00[EUR][1000 genomes]
rs9905888	1.00[EUR][1000 genomes]
rs9909145	1.00[EUR][1000 genomes]
rs9909882	1.00[EUR][1000 genomes]
rs9910067	1.00[EUR][1000 genomes]
rs9910252	1.00[EUR][1000 genomes]
rs9910902	1.00[EUR][1000 genomes]
rs9914007	1.00[EUR][1000 genomes]
rs9914605	1.00[EUR][1000 genomes]
rs9915023	1.00[EUR][1000 genomes]
rs9944467	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59941400-60004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:59941400-60004400	Weak transcription	Aorta	Aorta
3	chr17:59941400-60004400	Weak transcription	Pancreas	Pancrea
4	chr17:59941600-60003600	Weak transcription	Stomach Mucosa	stomach
5	chr17:59941600-60004400	Weak transcription	Colonic Mucosa	Colon
6	chr17:59942600-60002800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr17:59954400-60003800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr17:59959000-59996800	Weak transcription	Gastric	stomach
9	chr17:59959600-60003600	Weak transcription	Fetal Heart	heart
10	chr17:59966000-60004200	Weak transcription	Psoas Muscle	Psoas
11	chr17:59966200-59998000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr17:59975400-60004600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr17:59978600-60004400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr17:59980200-60003600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr17:59982600-60001400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr17:59982600-60003600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr17:59983000-59997000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr17:59983600-60004600	Weak transcription	Spleen	Spleen
19	chr17:59984200-60003400	Weak transcription	HSMMtube	muscle
20	chr17:59985000-60004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr17:59987800-59995800	Weak transcription	Small Intestine	intestine
22	chr17:59987800-60002600	Weak transcription	NHEK	skin
23	chr17:59989000-59994800	Weak transcription	Ovary	ovary
24	chr17:59989000-59996600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr17:59989000-59996800	Weak transcription	Esophagus	oesophagus
26	chr17:59989000-60001600	Weak transcription	Brain Germinal Matrix	brain
27	chr17:59989200-59995400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr17:59989200-59996600	Weak transcription	HSMM	muscle
29	chr17:59989200-59998000	Weak transcription	Fetal Kidney	kidney
30	chr17:59989200-59998600	Weak transcription	HMEC	breast
31	chr17:59989200-60001400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr17:59989200-60003400	Weak transcription	Colon Smooth Muscle	Colon
33	chr17:59989400-59994800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr17:59989400-59994800	Weak transcription	Brain Hippocampus Middle	brain
35	chr17:59989400-59994800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr17:59989400-59995600	Weak transcription	Fetal Brain Female	brain
37	chr17:59989400-59995600	Weak transcription	Left Ventricle	heart
38	chr17:59989400-59996600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr17:59989400-59996600	Weak transcription	Fetal Thymus	thymus
40	chr17:59989400-59996800	Weak transcription	Osteobl	bone
41	chr17:59989400-60001400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr17:59989400-60003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr17:59989400-60003800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr17:59989400-60004400	Weak transcription	Lung	lung
45	chr17:59989600-59994800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr17:59989600-59996800	Weak transcription	Fetal Lung	lung
47	chr17:59989600-59997000	Weak transcription	Brain Angular Gyrus	brain
48	chr17:59989600-59998200	Weak transcription	NHDF-Ad	bronchial
49	chr17:59989600-59998600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr17:59989600-60003600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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