Variant report

Variant	rs8068267
Chromosome Location	chr17:60113734-60113735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:60107140..60109283-chr17:60113223..60115385,2	MCF-7	breast:
2	chr17:60109100..60115940-chr17:60139087..60144589,10	MCF-7	breast:
3	chr17:60106228..60109334-chr17:60110578..60113962,3	MCF-7	breast:
4	chr17:60111538..60114046-chr17:60124883..60126946,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108510	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10401014	0.87[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16945750	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2278812	0.81[ASW][hapmap]
rs28431006	0.93[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4988342	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs58025472	1.00[EUR][1000 genomes]
rs58046635	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59794823	1.00[EUR][1000 genomes]
rs6504075	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6504076	1.00[EUR][1000 genomes]
rs6504078	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7211128	1.00[EUR][1000 genomes]
rs7212399	1.00[EUR][1000 genomes]
rs7212824	0.93[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7212884	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7213026	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7217530	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7217907	1.00[EUR][1000 genomes]
rs7221827	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7222876	1.00[EUR][1000 genomes]
rs7224112	1.00[EUR][1000 genomes]
rs7226248	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73991952	1.00[EUR][1000 genomes]
rs8065060	1.00[EUR][1000 genomes]
rs8069386	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8069903	1.00[EUR][1000 genomes]
rs8069946	1.00[EUR][1000 genomes]
rs8078342	1.00[EUR][1000 genomes]
rs9783841	1.00[EUR][1000 genomes]
rs9892063	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9892123	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9892513	0.89[AMR][1000 genomes]
rs9894718	1.00[EUR][1000 genomes]
rs9896768	1.00[EUR][1000 genomes]
rs9899042	0.87[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9899780	0.87[ASW][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9902699	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9903562	1.00[EUR][1000 genomes]
rs9905888	1.00[EUR][1000 genomes]
rs9909145	0.93[ASW][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9909882	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9910067	1.00[EUR][1000 genomes]
rs9910252	1.00[EUR][1000 genomes]
rs9910902	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9913351	0.93[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs9914007	1.00[EUR][1000 genomes]
rs9914605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9915023	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9916070	0.86[ASW][hapmap];0.91[LWK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs9944467	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60033000-60128400	Weak transcription	Stomach Mucosa	stomach
2	chr17:60074600-60123800	Weak transcription	Right Atrium	heart
3	chr17:60075800-60114400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr17:60077200-60136800	Strong transcription	Fetal Thymus	thymus
5	chr17:60098600-60114600	Strong transcription	Placenta	Placenta
6	chr17:60098600-60139200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr17:60098800-60135000	Strong transcription	Dnd41	blood
8	chr17:60099000-60134200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr17:60099400-60114200	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr17:60099400-60114400	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr17:60099400-60131000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:60099400-60139000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr17:60100600-60114200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr17:60104800-60113800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:60105000-60113800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr17:60105600-60117600	Strong transcription	Fetal Intestine Small	intestine
17	chr17:60105600-60120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr17:60105800-60113800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr17:60106000-60129800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr17:60106800-60114600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:60108000-60115600	Weak transcription	Right Ventricle	heart
22	chr17:60108000-60117200	Weak transcription	Esophagus	oesophagus
23	chr17:60108000-60141400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr17:60108800-60139000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr17:60109000-60114000	Strong transcription	Liver	Liver
26	chr17:60109000-60116600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr17:60109000-60119000	Weak transcription	Brain Germinal Matrix	brain
28	chr17:60109000-60119000	Weak transcription	Colonic Mucosa	Colon
29	chr17:60109000-60120200	Weak transcription	Small Intestine	intestine
30	chr17:60109000-60128600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr17:60109000-60141200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr17:60109600-60115400	Weak transcription	HUVEC	blood vessel
33	chr17:60110400-60123800	Weak transcription	Psoas Muscle	Psoas
34	chr17:60110600-60114800	Weak transcription	Gastric	stomach
35	chr17:60110600-60135200	Weak transcription	Aorta	Aorta
36	chr17:60110600-60139800	Weak transcription	Spleen	Spleen
37	chr17:60111000-60118400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr17:60111000-60120200	Weak transcription	Ovary	ovary
39	chr17:60111000-60130600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr17:60111000-60133800	Weak transcription	Pancreas	Pancrea
41	chr17:60111200-60114000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr17:60111200-60114400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr17:60111200-60114800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr17:60111200-60115400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr17:60111200-60117200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr17:60111200-60117600	Weak transcription	Fetal Brain Female	brain
47	chr17:60111200-60120200	Weak transcription	Brain Anterior Caudate	brain
48	chr17:60111200-60122600	Weak transcription	HMEC	breast
49	chr17:60111200-60123600	Weak transcription	Brain Hippocampus Middle	brain
50	chr17:60111200-60129000	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links