Variant report

Variant	rs8069946
Chromosome Location	chr17:59885257-59885258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59883764..59885405-chr20:60640568..60643018,2	MCF-7	breast:
2	chr17:59794574..59796740-chr17:59883852..59885570,2	MCF-7	breast:
3	chr17:59875243..59877912-chr17:59882843..59885260,2	K562	blood:

Variant related genes	Relation type
ENSG00000130699	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16945750	1.00[EUR][1000 genomes]
rs28431006	1.00[EUR][1000 genomes]
rs4988342	1.00[EUR][1000 genomes]
rs58025472	1.00[EUR][1000 genomes]
rs58046635	1.00[EUR][1000 genomes]
rs59794823	1.00[EUR][1000 genomes]
rs6504075	1.00[EUR][1000 genomes]
rs6504076	1.00[EUR][1000 genomes]
rs6504078	1.00[EUR][1000 genomes]
rs7211128	1.00[EUR][1000 genomes]
rs7212399	1.00[EUR][1000 genomes]
rs7212824	1.00[EUR][1000 genomes]
rs7212884	1.00[EUR][1000 genomes]
rs7213026	1.00[EUR][1000 genomes]
rs7217530	1.00[EUR][1000 genomes]
rs7221827	1.00[EUR][1000 genomes]
rs7222876	1.00[EUR][1000 genomes]
rs7224112	1.00[EUR][1000 genomes]
rs7226248	1.00[EUR][1000 genomes]
rs73991952	1.00[EUR][1000 genomes]
rs8065060	1.00[EUR][1000 genomes]
rs8068267	1.00[EUR][1000 genomes]
rs8069386	1.00[EUR][1000 genomes]
rs8069903	1.00[EUR][1000 genomes]
rs8078342	1.00[EUR][1000 genomes]
rs9783841	1.00[EUR][1000 genomes]
rs9892063	1.00[EUR][1000 genomes]
rs9892123	1.00[EUR][1000 genomes]
rs9894718	1.00[EUR][1000 genomes]
rs9899780	1.00[EUR][1000 genomes]
rs9902699	1.00[EUR][1000 genomes]
rs9903562	1.00[EUR][1000 genomes]
rs9909145	1.00[EUR][1000 genomes]
rs9909882	1.00[EUR][1000 genomes]
rs9910067	1.00[EUR][1000 genomes]
rs9910252	1.00[EUR][1000 genomes]
rs9910902	1.00[EUR][1000 genomes]
rs9914007	1.00[EUR][1000 genomes]
rs9914605	1.00[EUR][1000 genomes]
rs9915023	1.00[EUR][1000 genomes]
rs9944467	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
3	nsv908674	chr17:59800827-59899790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	nsv575841	chr17:59812748-59914681	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
5	nsv575842	chr17:59812748-59927307	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
6	nsv908675	chr17:59835864-59937286	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
7	esv1794309	chr17:59861640-59907952	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	32 gene(s)	inside rSNPs	diseases
8	esv1827960	chr17:59869069-59897455	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
9	nsv575843	chr17:59869081-59935723	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59816800-59887800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:59825800-59898400	Weak transcription	Thymus	Thymus
3	chr17:59848800-59911200	Weak transcription	HUVEC	blood vessel
4	chr17:59849400-59887200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr17:59849800-59887200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr17:59850000-59887000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:59850000-59887000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr17:59851200-59902600	Weak transcription	Fetal Stomach	stomach
9	chr17:59852600-59898000	Weak transcription	Fetal Intestine Small	intestine
10	chr17:59857000-59888600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:59862000-59887200	Weak transcription	Fetal Kidney	kidney
12	chr17:59863600-59925000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr17:59868400-59888600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr17:59869200-59898200	Weak transcription	Fetal Muscle Leg	muscle
15	chr17:59869600-59887400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr17:59870400-59933400	Weak transcription	Fetal Intestine Large	intestine
17	chr17:59873200-59905000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr17:59874000-59887000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr17:59874400-59910600	Weak transcription	Hela-S3	cervix
20	chr17:59874600-59887200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr17:59875400-59886600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr17:59876600-59885600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr17:59879000-59888400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr17:59879400-59898000	Weak transcription	Fetal Thymus	thymus
25	chr17:59879600-59893400	Weak transcription	HepG2	liver
26	chr17:59880800-59887200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr17:59881000-59898400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr17:59882600-59889000	Strong transcription	Dnd41	blood
29	chr17:59883000-59887200	Weak transcription	HSMMtube	muscle
30	chr17:59883400-59887400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr17:59883600-59885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr17:59883600-59886000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr17:59883600-59886800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr17:59883600-59886800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr17:59883600-59887000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr17:59883600-59887000	Weak transcription	HSMM	muscle
37	chr17:59883600-59896800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr17:59883600-59898400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr17:59883800-59887000	Weak transcription	Fetal Lung	lung
40	chr17:59883800-59887000	Weak transcription	HMEC	breast
41	chr17:59883800-59887200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr17:59883800-59887200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr17:59883800-59887200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr17:59883800-59887200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr17:59883800-59887200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr17:59883800-59887200	Weak transcription	NH-A	brain
47	chr17:59883800-59893600	Weak transcription	GM12878-XiMat	blood
48	chr17:59883800-59898400	Weak transcription	A549	lung
49	chr17:59884000-59887200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr17:59884000-59887200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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