Variant report

Variant	rs9913351
Chromosome Location	chr17:60018352-60018353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10401014	0.87[LWK][hapmap];1.00[TSI][hapmap]
rs2278812	0.87[ASW][hapmap]
rs28431006	1.00[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4988342	1.00[TSI][hapmap]
rs6504075	1.00[TSI][hapmap]
rs7212824	1.00[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7212884	1.00[TSI][hapmap]
rs7213026	1.00[TSI][hapmap]
rs7217530	0.95[YRI][hapmap]
rs7222876	1.00[TSI][hapmap]
rs7226248	1.00[TSI][hapmap]
rs8068267	0.93[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs8069386	1.00[TSI][hapmap]
rs9892063	1.00[TSI][hapmap]
rs9899042	0.87[LWK][hapmap];1.00[TSI][hapmap]
rs9899780	0.93[ASW][hapmap];0.88[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap]
rs9909145	1.00[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9909882	1.00[TSI][hapmap]
rs9910451	0.81[ASW][hapmap]
rs9916070	0.91[LWK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60005400-60018400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:60005800-60022000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr17:60005800-60022000	Weak transcription	Thymus	Thymus
4	chr17:60005800-60022800	Weak transcription	Brain Angular Gyrus	brain
5	chr17:60006000-60018400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr17:60006000-60018600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr17:60006000-60018600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr17:60006000-60019400	Weak transcription	Hela-S3	cervix
9	chr17:60006000-60019600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr17:60006000-60020400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr17:60006000-60020800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr17:60006000-60021000	Weak transcription	HMEC	breast
13	chr17:60006000-60021200	Weak transcription	Osteobl	bone
14	chr17:60006000-60021400	Weak transcription	HUVEC	blood vessel
15	chr17:60006000-60022000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr17:60006000-60022000	Weak transcription	Fetal Brain Female	brain
17	chr17:60006000-60022000	Weak transcription	HSMMtube	muscle
18	chr17:60006000-60022800	Weak transcription	Brain Anterior Caudate	brain
19	chr17:60006000-60023000	Weak transcription	Brain Hippocampus Middle	brain
20	chr17:60006000-60023600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr17:60009800-60018400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr17:60012000-60018600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr17:60012600-60018600	Weak transcription	Liver	Liver
24	chr17:60012800-60023800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr17:60013200-60021000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr17:60013400-60018400	Weak transcription	Fetal Stomach	stomach
27	chr17:60013400-60021400	Weak transcription	NHDF-Ad	bronchial
28	chr17:60013800-60021600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr17:60014200-60021200	Weak transcription	Dnd41	blood
30	chr17:60014200-60030000	Weak transcription	Stomach Mucosa	stomach
31	chr17:60014400-60020400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr17:60014400-60022000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr17:60014400-60022200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr17:60014600-60024400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr17:60014800-60019200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr17:60014800-60020200	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr17:60014800-60020600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr17:60014800-60023800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr17:60014800-60028000	Weak transcription	Colonic Mucosa	Colon
40	chr17:60015000-60018400	Weak transcription	Placenta	Placenta
41	chr17:60015000-60022800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr17:60015200-60018600	Weak transcription	Fetal Thymus	thymus
43	chr17:60015400-60021200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr17:60015400-60022200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr17:60015400-60023400	Weak transcription	NHLF	lung
46	chr17:60015400-60023800	Weak transcription	Fetal Intestine Small	intestine
47	chr17:60015600-60021800	Weak transcription	HepG2	liver
48	chr17:60015600-60022400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr17:60015800-60019600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr17:60015800-60021800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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