Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10519144	0.88[JPT][hapmap]
rs12232347	1.00[JPT][hapmap]
rs12438629	0.84[MEX][hapmap];1.00[TSI][hapmap]
rs12441358	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12441436	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12442506	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12442569	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs12591667	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12595158	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs1559673	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17238110	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17238127	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17238189	0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs17238210	1.00[JPT][hapmap]
rs17303866	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17303873	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs2113935	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap]
rs2241492	0.80[ASN][1000 genomes]
rs3784635	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4774426	1.00[JPT][hapmap]
rs4775446	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4775452	0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7177538	1.00[JPT][hapmap]
rs8030161	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv521334	chr15:62129809-62340126	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527451	chr15:62129809-62340126	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9788635	MGC15885	cis	hippocampus	BrainEAC

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62132400-62159000	Weak transcription	HSMM	muscle
2	chr15:62132400-62171200	Weak transcription	HMEC	breast
3	chr15:62132800-62146600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: