Variant report

Variant	rs9805003
Chromosome Location	chr12:83534194-83534195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10161148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10161243	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11115608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11115610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12301018	1.00[AFR][1000 genomes]
rs12308889	1.00[AMR][1000 genomes]
rs12311847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12314265	1.00[AMR][1000 genomes]
rs17010596	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv559559	chr12:83505512-83765069	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83516400-83538800	Weak transcription	Fetal Brain Male	brain
2	chr12:83525200-83536600	Weak transcription	Fetal Heart	heart
3	chr12:83526600-83537600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr12:83527000-83539200	Weak transcription	Colon Smooth Muscle	Colon
5	chr12:83533000-83534400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:83533200-83534200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
7	chr12:83533400-83534400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:83533400-83534400	ZNF genes & repeats	Fetal Muscle Leg	muscle
9	chr12:83533600-83534400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr12:83533600-83534400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:83533600-83534400	ZNF genes & repeats	Fetal Stomach	stomach
12	chr12:83533600-83535000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr12:83533800-83534400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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