Variant report

Variant	rs9806214
Chromosome Location	chr15:51901923-51901924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51898533..51902972-chr15:51911457..51915866,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104093	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10851501	0.81[EUR][1000 genomes]
rs11070861	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12324531	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12441057	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12708427	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12904173	0.81[EUR][1000 genomes]
rs1378894	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1378895	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1456297	0.80[EUR][1000 genomes]
rs17524906	0.81[EUR][1000 genomes]
rs1902595	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1902596	0.86[EUR][1000 genomes]
rs2252220	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2414112	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2606141	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2606143	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2607112	0.80[EUR][1000 genomes]
rs28408214	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35011964	0.81[EUR][1000 genomes]
rs4465557	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4774594	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4775954	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6493507	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6493511	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493512	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493514	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs956171	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9944266	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51889400-51909400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:51890000-51902000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:51891800-51903800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr15:51892600-51913000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:51893000-51911000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:51893800-51904000	Weak transcription	Fetal Stomach	stomach
7	chr15:51894000-51906000	Weak transcription	Dnd41	blood
8	chr15:51895000-51911600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:51895200-51913000	Weak transcription	HMEC	breast
10	chr15:51896000-51904000	Weak transcription	Lung	lung
11	chr15:51897200-51910800	Weak transcription	A549	lung
12	chr15:51901600-51902200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:51901600-51902200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr15:51901600-51902800	Enhancers	Monocytes-CD14+_RO01746	blood

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