Variant report

Variant	rs9806269
Chromosome Location	chr15:73341346-73341347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr15:73340508-73341833	U2OS	brain:	n/a	n/a
2	RCOR1	chr15:73341046-73341542	K562	blood:	n/a	n/a
3	ATF1	chr15:73341301-73341648	K562	blood:	n/a	n/a
4	KAP1	chr15:73340297-73341652	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73339037..73341468-chr15:73372112..73374015,2	MCF-7	breast:

Variant related genes	Relation type
NEO1	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11856537	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12595434	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13379710	0.89[ASN][1000 genomes]
rs28742992	0.83[AMR][1000 genomes]
rs4436752	0.89[ASN][1000 genomes]
rs4776623	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4777585	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4777587	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4777588	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6495044	0.88[ASN][1000 genomes]
rs6495045	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6495046	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6495050	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495051	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6495052	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6495053	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6495057	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6495058	0.85[AMR][1000 genomes]
rs7163543	0.89[ASN][1000 genomes]
rs7168555	0.82[AMR][1000 genomes]
rs7173710	0.86[ASN][1000 genomes]
rs7178123	0.86[ASN][1000 genomes]
rs7184025	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7495084	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8040109	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73336000-73343200	Weak transcription	Fetal Brain Female	brain
2	chr15:73339200-73343400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:73339400-73343600	Weak transcription	Pancreas	Pancrea
4	chr15:73339600-73343200	Weak transcription	Fetal Brain Male	brain
5	chr15:73341000-73341600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr15:73341000-73342800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:73341200-73341400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:73341200-73341400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr15:73341200-73341400	Enhancers	Fetal Intestine Large	intestine
10	chr15:73341200-73341800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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