Variant report

Variant	rs7184025
Chromosome Location	chr15:73392760-73392761
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73392625..73394510-chr15:73395683..73398549,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1017808	0.85[ASN][1000 genomes]
rs11072405	0.85[ASN][1000 genomes]
rs11072407	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072408	0.83[ASN][1000 genomes]
rs1119251	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11634045	0.85[ASN][1000 genomes]
rs11636981	0.88[ASN][1000 genomes]
rs11856537	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12594776	0.85[ASN][1000 genomes]
rs12595434	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12901272	0.81[ASN][1000 genomes]
rs12901649	0.86[ASN][1000 genomes]
rs12912737	0.86[ASN][1000 genomes]
rs1382782	0.87[ASN][1000 genomes]
rs1564347	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1585766	0.85[ASN][1000 genomes]
rs16957683	0.86[ASN][1000 genomes]
rs1904335	0.85[ASN][1000 genomes]
rs2061890	0.84[ASN][1000 genomes]
rs2415142	0.88[ASN][1000 genomes]
rs2415145	0.83[ASN][1000 genomes]
rs2415146	0.83[ASN][1000 genomes]
rs28742992	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34953385	0.80[ASN][1000 genomes]
rs35348961	0.83[ASN][1000 genomes]
rs35391014	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35608416	0.82[ASN][1000 genomes]
rs36072085	0.85[ASN][1000 genomes]
rs4776623	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4777585	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4777587	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4777588	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4777592	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59628124	0.86[ASN][1000 genomes]
rs6495045	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6495046	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495050	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6495051	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495052	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495053	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6495057	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6495058	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7168555	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7177758	0.85[ASN][1000 genomes]
rs7495084	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8039418	0.83[ASN][1000 genomes]
rs9806269	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs983067	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904341	chr15:73390790-73483718	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73371200-73397000	Weak transcription	Pancreas	Pancrea
2	chr15:73371600-73393800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:73374200-73393600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:73384600-73409200	Weak transcription	Fetal Lung	lung
5	chr15:73388800-73431200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:73389000-73393600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:73389000-73401000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:73389000-73404000	Weak transcription	Ovary	ovary
9	chr15:73390000-73400800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:73390200-73393600	Weak transcription	Fetal Intestine Small	intestine
11	chr15:73392000-73400800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:73392400-73393000	Enhancers	Psoas Muscle	Psoas
13	chr15:73392400-73397600	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:73392400-73397600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:73392400-73400800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:73392600-73393000	Weak transcription	Aorta	Aorta
17	chr15:73392600-73393600	Weak transcription	Fetal Brain Male	brain
18	chr15:73392600-73398000	Weak transcription	Brain Substantia Nigra	brain

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