Variant report

Variant	rs1585766
Chromosome Location	chr15:73491678-73491679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1017808	0.91[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs11072405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11072407	0.91[ASN][1000 genomes]
rs11072408	0.89[ASN][1000 genomes]
rs11072411	0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11072412	0.82[ASN][1000 genomes]
rs11072415	0.81[AMR][1000 genomes]
rs1119251	0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs11634045	0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs11636981	0.85[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs11856537	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs12439852	0.82[ASN][1000 genomes]
rs12594776	0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs12595434	0.82[CHB][hapmap]
rs12901272	0.89[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12901649	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12912737	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1382782	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1564347	0.86[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs16957683	0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs1878940	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1904335	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2061890	0.94[ASN][1000 genomes]
rs2252725	0.85[JPT][hapmap]
rs2415142	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2415145	0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2415146	0.89[ASN][1000 genomes]
rs2680338	0.81[ASN][1000 genomes]
rs28742992	0.85[ASN][1000 genomes]
rs34456824	0.82[ASN][1000 genomes]
rs34953385	0.91[ASN][1000 genomes]
rs35348961	0.89[ASN][1000 genomes]
rs35391014	0.93[ASN][1000 genomes]
rs35608416	0.90[ASN][1000 genomes]
rs35778649	0.82[ASN][1000 genomes]
rs36072085	0.95[ASN][1000 genomes]
rs3784795	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs4776631	0.84[ASN][1000 genomes]
rs4777585	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs4777587	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4777588	0.86[ASN][1000 genomes]
rs4777592	0.86[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs486267	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs488156	0.81[CEU][hapmap]
rs489531	0.85[JPT][hapmap]
rs492362	0.82[CEU][hapmap]
rs498005	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs498868	0.81[CEU][hapmap]
rs520824	0.83[ASN][1000 genomes]
rs549253	0.84[ASN][1000 genomes]
rs559260	0.82[ASN][1000 genomes]
rs563076	0.82[ASN][1000 genomes]
rs573397	0.82[CEU][hapmap]
rs59628124	0.96[ASN][1000 genomes]
rs6495050	0.81[ASN][1000 genomes]
rs6495051	0.81[ASN][1000 genomes]
rs6495052	0.86[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs6495053	0.86[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs6495057	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs6495058	0.88[ASN][1000 genomes]
rs7168555	0.86[ASN][1000 genomes]
rs7177758	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7184025	0.85[ASN][1000 genomes]
rs7495084	0.86[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs8039418	0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8043494	0.87[ASN][1000 genomes]
rs983067	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73455200-73500400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:73472000-73496800	Weak transcription	Ovary	ovary
3	chr15:73472200-73504600	Weak transcription	Left Ventricle	heart
4	chr15:73473400-73496400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:73474200-73498200	Weak transcription	Liver	Liver
6	chr15:73474200-73523800	Weak transcription	Esophagus	oesophagus
7	chr15:73474600-73500600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:73475200-73517600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:73475400-73495600	Weak transcription	Brain Anterior Caudate	brain
10	chr15:73475800-73492000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:73476000-73492000	Weak transcription	Fetal Intestine Small	intestine
12	chr15:73476000-73493800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:73476000-73494800	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:73476200-73493800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:73476200-73495000	Weak transcription	Brain Substantia Nigra	brain
16	chr15:73476200-73506200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:73477200-73492800	Weak transcription	Fetal Stomach	stomach
18	chr15:73477200-73497400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:73477600-73492000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:73477600-73503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:73477800-73499200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:73478000-73491800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr15:73482000-73492600	Weak transcription	Fetal Intestine Large	intestine
24	chr15:73482000-73504600	Weak transcription	Aorta	Aorta
25	chr15:73483000-73493800	Weak transcription	Adipose Nuclei	Adipose
26	chr15:73483600-73505800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:73483800-73494800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:73486800-73493800	Weak transcription	Fetal Brain Female	brain
29	chr15:73487200-73519800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr15:73488200-73494800	Weak transcription	Psoas Muscle	Psoas
31	chr15:73489000-73492000	Weak transcription	Fetal Brain Male	brain
32	chr15:73489000-73502200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:73490200-73492000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:73491400-73492000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:73491400-73492400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:73491400-73492400	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr15:73491400-73496600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr15:73491600-73491800	ZNF genes & repeats	Fetal Lung	lung

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