The 2.0 version of rSNPBase

Variant report

Variant rs2680338
Chromosome Location chr15:73580035-73580036
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:73535200-73588000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr15:73536200-73602000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
3 chr15:73538000-73593400 Weak transcription Placenta Amnion Placenta Amnion
4 chr15:73540000-73584800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr15:73544400-73583000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr15:73546800-73583000 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr15:73546800-73588600 Weak transcription Spleen Spleen
8 chr15:73547800-73584600 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr15:73550800-73581400 Weak transcription HMEC breast
10 chr15:73552400-73588200 Weak transcription Hela-S3 cervix
11 chr15:73552800-73598400 Weak transcription Small Intestine intestine
12 chr15:73553800-73581200 Weak transcription Primary T cells fromperipheralblood blood
13 chr15:73560800-73597200 Strong transcription Rectal Mucosa Donor 31 rectum
14 chr15:73562800-73583000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr15:73563200-73598600 Weak transcription Stomach Mucosa stomach
16 chr15:73563400-73581000 Weak transcription Fetal Brain Male brain
17 chr15:73563400-73581200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr15:73563400-73585600 Strong transcription Fetal Intestine Large intestine
19 chr15:73563600-73593600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr15:73566400-73597800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr15:73568600-73600800 Strong transcription Rectal Mucosa Donor 29 rectum
22 chr15:73570200-73597000 Strong transcription Breast Myoepithelial Primary Cells Breast
23 chr15:73570400-73597000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr15:73571200-73601400 Strong transcription Fetal Stomach stomach
25 chr15:73572400-73587600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr15:73574000-73583600 Strong transcription HUES64 Cell Line embryonic stem cell
27 chr15:73574000-73596800 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr15:73574600-73581200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr15:73574800-73588000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr15:73575000-73580200 Strong transcription Fetal Intestine Small intestine
31 chr15:73575000-73583600 Strong transcription Brain Inferior Temporal Lobe brain
32 chr15:73575000-73584200 Strong transcription H1 Cell Line embryonic stem cell
33 chr15:73575200-73583600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr15:73575200-73583800 Strong transcription iPS-20b Cell Line embryonic stem cell
35 chr15:73575600-73585600 Weak transcription HepG2 liver
36 chr15:73576000-73581000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr15:73576000-73586400 Strong transcription Skeletal Muscle Female skeletal muscle
38 chr15:73576200-73580600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
39 chr15:73576200-73583000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr15:73576200-73585600 Weak transcription Esophagus oesophagus
41 chr15:73576200-73587600 Weak transcription Right Ventricle heart
42 chr15:73576400-73580600 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr15:73576400-73581000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr15:73576400-73594600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr15:73576600-73581200 Weak transcription Primary T helper cells fromperipheralblood blood
46 chr15:73576600-73585000 Weak transcription Muscle Satellite Cultured Cells --
47 chr15:73577000-73580800 Weak transcription Fetal Heart heart
48 chr15:73577400-73582600 Enhancers Primary monocytes fromperipheralblood blood
49 chr15:73577600-73582400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr15:73577600-73582600 Strong transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015