Variant report

Variant	rs72741448
Chromosome Location	chr15:73617044-73617045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73610006..73611757-chr15:73616928..73619892,2	K562	blood:
2	chr15:73567230..73569209-chr15:73616607..73619389,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11072411	0.82[ASN][1000 genomes]
rs11072412	0.82[ASN][1000 genomes]
rs11072415	0.84[ASN][1000 genomes]
rs12439852	0.82[ASN][1000 genomes]
rs12440576	0.92[ASN][1000 genomes]
rs12442755	0.88[ASN][1000 genomes]
rs12591304	0.86[ASN][1000 genomes]
rs1878940	0.83[ASN][1000 genomes]
rs2292915	0.88[ASN][1000 genomes]
rs2660821	0.88[ASN][1000 genomes]
rs2680338	0.80[ASN][1000 genomes]
rs2680340	0.88[ASN][1000 genomes]
rs34456824	0.82[ASN][1000 genomes]
rs35778649	0.82[ASN][1000 genomes]
rs3743496	0.90[ASN][1000 genomes]
rs3784795	0.81[ASN][1000 genomes]
rs3859014	0.86[ASN][1000 genomes]
rs3859015	0.86[ASN][1000 genomes]
rs472681	0.88[ASN][1000 genomes]
rs476846	0.84[ASN][1000 genomes]
rs4776631	0.81[ASN][1000 genomes]
rs486267	0.81[ASN][1000 genomes]
rs488156	0.84[ASN][1000 genomes]
rs491742	0.82[ASN][1000 genomes]
rs492362	0.84[ASN][1000 genomes]
rs498005	0.84[ASN][1000 genomes]
rs498868	0.83[ASN][1000 genomes]
rs519946	0.84[ASN][1000 genomes]
rs519970	0.84[ASN][1000 genomes]
rs520824	0.80[ASN][1000 genomes]
rs549253	0.81[ASN][1000 genomes]
rs559260	0.82[ASN][1000 genomes]
rs563076	0.82[ASN][1000 genomes]
rs564765	0.80[ASN][1000 genomes]
rs568435	0.84[ASN][1000 genomes]
rs569532	0.83[ASN][1000 genomes]
rs570001	0.90[ASN][1000 genomes]
rs573397	0.84[ASN][1000 genomes]
rs576813	0.88[ASN][1000 genomes]
rs62015498	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73598200-73622800	Weak transcription	Right Atrium	heart
2	chr15:73598800-73620000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr15:73601000-73617800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:73611000-73620200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:73611400-73622200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:73612000-73617400	Weak transcription	Fetal Heart	heart
7	chr15:73612000-73618000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:73612000-73620200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:73612200-73623200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:73612400-73618400	Weak transcription	Brain Germinal Matrix	brain
11	chr15:73612400-73620200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:73612400-73623000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:73612600-73617200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:73614000-73618600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:73614800-73618000	Weak transcription	Left Ventricle	heart
16	chr15:73614800-73618600	Strong transcription	Fetal Brain Female	brain
17	chr15:73615000-73617400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:73615000-73618200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:73615000-73622800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:73615200-73617400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr15:73615400-73617600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:73615400-73618200	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr15:73615600-73617200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:73615800-73618000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:73616200-73618200	Weak transcription	Right Ventricle	heart
26	chr15:73616600-73617200	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr15:73616600-73617400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:73616800-73617800	Strong transcription	HUES48 Cell Line	embryonic stem cell

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