Variant report

Variant	rs12591304
Chromosome Location	chr15:73611605-73611606
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73610006..73611757-chr15:73616928..73619892,2	K562	blood:
2	chr15:73606322..73609750-chr15:73610871..73613707,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1017808	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072407	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072408	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11072411	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072412	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1119251	0.83[AFR][1000 genomes]
rs11634045	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11636981	0.82[AMR][1000 genomes]
rs12439852	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12440576	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12442755	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12594776	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12901272	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1382782	0.82[AMR][1000 genomes]
rs1564347	0.83[AFR][1000 genomes]
rs16957683	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1878940	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2061890	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2292915	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2415145	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2415146	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2660821	0.87[ASN][1000 genomes]
rs2680338	0.93[ASN][1000 genomes]
rs2680340	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2680341	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34456824	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35348961	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35391014	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35608416	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35778649	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36072085	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3743496	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3784795	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3859014	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3859015	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs472681	0.87[ASN][1000 genomes]
rs4776631	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4777592	0.83[AFR][1000 genomes]
rs486267	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs520824	0.92[ASN][1000 genomes]
rs549253	0.93[ASN][1000 genomes]
rs559260	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs563076	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs564765	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs570001	0.88[ASN][1000 genomes]
rs576813	0.87[ASN][1000 genomes]
rs59628124	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62015498	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72741448	0.86[ASN][1000 genomes]
rs8039418	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73596800-73616800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr15:73598200-73622800	Weak transcription	Right Atrium	heart
3	chr15:73598800-73620000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:73601000-73617800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:73601400-73611800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:73601600-73615600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:73610000-73612000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:73610000-73612000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:73610000-73612000	Enhancers	Primary B cells from peripheral blood	blood
10	chr15:73610000-73612600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr15:73610200-73611800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:73610200-73612000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:73610200-73612800	Enhancers	Fetal Brain Male	brain
14	chr15:73610400-73612400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr15:73610800-73612000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr15:73610800-73612000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:73610800-73612200	Enhancers	Brain Hippocampus Middle	brain
18	chr15:73610800-73612200	Flanking Active TSS	Fetal Brain Female	brain
19	chr15:73611000-73620200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:73611200-73612600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:73611400-73611800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:73611400-73612200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:73611400-73622200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:73611600-73611800	Flanking Active TSS	Brain Germinal Matrix	brain
25	chr15:73611600-73612000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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