Variant report

Variant	rs4776631
Chromosome Location	chr15:73561633-73561634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73556714..73560483-chr15:73561340..73564858,6	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1017808	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11072405	0.81[ASN][1000 genomes]
rs11072407	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11072408	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11072411	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11072412	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1119251	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11634045	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11636981	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11856537	0.81[EUR][1000 genomes]
rs12439852	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12440576	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12442755	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12591304	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12594776	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12901272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12901649	0.82[ASN][1000 genomes]
rs12912737	0.82[ASN][1000 genomes]
rs1382782	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1564347	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1585766	0.84[ASN][1000 genomes]
rs16957683	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1878940	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1904335	0.82[ASN][1000 genomes]
rs2061890	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2252725	0.80[ASN][1000 genomes]
rs2292915	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2415145	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2415146	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2660821	0.89[ASN][1000 genomes]
rs2680338	0.97[ASN][1000 genomes]
rs2680340	0.89[ASN][1000 genomes]
rs2680341	0.95[ASN][1000 genomes]
rs34456824	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34953385	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35348961	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35391014	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35608416	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35778649	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36072085	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3743496	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3784795	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3859014	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3859015	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs472681	0.89[ASN][1000 genomes]
rs4777585	0.82[EUR][1000 genomes]
rs4777587	0.82[EUR][1000 genomes]
rs4777588	0.82[EUR][1000 genomes]
rs4777592	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs486267	0.98[ASN][1000 genomes]
rs489531	0.81[ASN][1000 genomes]
rs520824	0.95[ASN][1000 genomes]
rs549253	0.96[ASN][1000 genomes]
rs559260	0.98[ASN][1000 genomes]
rs563076	0.99[ASN][1000 genomes]
rs564765	0.94[ASN][1000 genomes]
rs570001	0.84[ASN][1000 genomes]
rs576813	0.89[ASN][1000 genomes]
rs59628124	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62015498	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6495050	0.80[EUR][1000 genomes]
rs6495051	0.82[EUR][1000 genomes]
rs6495052	0.82[EUR][1000 genomes]
rs6495053	0.82[EUR][1000 genomes]
rs7177758	0.82[ASN][1000 genomes]
rs72741448	0.81[ASN][1000 genomes]
rs7495084	0.81[EUR][1000 genomes]
rs8039418	0.85[ASN][1000 genomes]
rs8043494	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs983067	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:73527600-73562400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:73536400-73566600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:73536800-73562400	Weak transcription	A549	lung
10	chr15:73537600-73572200	Weak transcription	Fetal Heart	heart
11	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:73538200-73562600	Strong transcription	Fetal Intestine Large	intestine
13	chr15:73540000-73565400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:73540000-73584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:73540800-73562400	Weak transcription	HepG2	liver
16	chr15:73543000-73567400	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr15:73543400-73562800	Weak transcription	Stomach Mucosa	stomach
18	chr15:73544400-73583000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:73546800-73563000	Weak transcription	Right Ventricle	heart
20	chr15:73546800-73583000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr15:73546800-73588600	Weak transcription	Spleen	Spleen
22	chr15:73547600-73576600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:73547800-73584600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr15:73548200-73575000	Weak transcription	Gastric	stomach
25	chr15:73548200-73575200	Weak transcription	Pancreas	Pancrea
26	chr15:73548200-73575600	Weak transcription	Esophagus	oesophagus
27	chr15:73548600-73562400	Weak transcription	Aorta	Aorta
28	chr15:73549200-73562600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:73549200-73565400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:73549200-73565400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:73549200-73575200	Weak transcription	Brain Germinal Matrix	brain
32	chr15:73549200-73575200	Weak transcription	Lung	lung
33	chr15:73550800-73581400	Weak transcription	HMEC	breast
34	chr15:73551600-73565600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr15:73552000-73577800	Weak transcription	Psoas Muscle	Psoas
36	chr15:73552400-73588200	Weak transcription	Hela-S3	cervix
37	chr15:73552800-73562600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr15:73552800-73598400	Weak transcription	Small Intestine	intestine
39	chr15:73553200-73562800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:73553600-73562400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr15:73553800-73581200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr15:73554000-73562400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:73555000-73570600	Weak transcription	Liver	Liver
44	chr15:73555200-73575600	Weak transcription	Colonic Mucosa	Colon
45	chr15:73557800-73564800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr15:73557800-73567800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:73558000-73562400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:73558200-73562400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr15:73558600-73562600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:73558600-73564000	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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