Variant report

Variant	rs1017808
Chromosome Location	chr15:73525613-73525614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73518381..73521603-chr15:73524397..73526863,3	K562	blood:
2	chr15:73523932..73526335-chr15:73528553..73530917,2	K562	blood:
3	chr15:73518381..73521870-chr15:73524452..73526863,3	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10518997	1.00[YRI][hapmap]
rs11072405	0.90[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11072407	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072408	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11072411	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11072412	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1119251	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11634045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11636981	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11856537	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12439852	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12440576	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12442755	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12591304	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12594776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12595434	0.82[CEU][hapmap];0.91[CHB][hapmap]
rs12901272	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12901649	0.84[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs12912737	0.92[ASN][1000 genomes]
rs1382782	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1564347	0.87[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1585766	0.91[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs16957683	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1878940	0.84[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs1904335	0.92[ASN][1000 genomes]
rs2061890	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2252725	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs2292915	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2415142	0.89[ASN][1000 genomes]
rs2415145	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2415146	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2660821	0.81[CHB][hapmap]
rs2680338	0.86[ASN][1000 genomes]
rs2680341	0.84[ASN][1000 genomes]
rs28742992	0.84[ASN][1000 genomes]
rs34456824	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34953385	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35348961	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35391014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35608416	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35778649	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36072085	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3743496	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3784795	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3859014	0.91[CEU][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3859015	0.91[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4776623	0.81[ASN][1000 genomes]
rs4776631	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4777585	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4777587	0.86[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4777588	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4777592	0.87[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs486267	0.80[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs489531	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs520824	0.84[ASN][1000 genomes]
rs549253	0.85[ASN][1000 genomes]
rs559260	0.88[ASN][1000 genomes]
rs563076	0.88[ASN][1000 genomes]
rs564765	0.84[ASN][1000 genomes]
rs576813	0.80[CEU][hapmap];0.83[CHB][hapmap]
rs59628124	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62015498	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6495045	0.82[EUR][1000 genomes]
rs6495046	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495050	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6495051	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6495052	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6495053	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6495057	0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6495058	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7163543	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs7168555	0.82[CEU][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7173710	0.86[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap]
rs7177758	0.86[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs7184025	0.85[ASN][1000 genomes]
rs7495084	0.85[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8032762	1.00[YRI][hapmap]
rs8039418	0.81[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs8043494	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs983067	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73493400-73528600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:73497800-73541800	Weak transcription	Fetal Kidney	kidney
3	chr15:73509600-73528800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:73516600-73528200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:73516800-73528600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:73517600-73528400	Weak transcription	Fetal Lung	lung
7	chr15:73518200-73528600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:73518200-73540800	Weak transcription	Colonic Mucosa	Colon
9	chr15:73518400-73531800	Weak transcription	Aorta	Aorta
10	chr15:73518600-73528600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:73518600-73528600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:73518600-73528800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:73518600-73529800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:73518600-73534000	Weak transcription	Right Ventricle	heart
15	chr15:73518800-73526400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:73518800-73546200	Weak transcription	Psoas Muscle	Psoas
17	chr15:73518800-73547800	Weak transcription	Left Ventricle	heart
18	chr15:73520400-73528400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:73520400-73528600	Weak transcription	Brain Anterior Caudate	brain
20	chr15:73520400-73528600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:73520800-73536400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:73521600-73526000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr15:73523000-73526600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:73523200-73526400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:73523200-73547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:73523800-73526800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:73523800-73527000	Enhancers	Brain Cingulate Gyrus	brain
31	chr15:73523800-73530200	Weak transcription	Adipose Nuclei	Adipose
32	chr15:73524200-73526600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:73524200-73526800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:73524200-73528600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:73524200-73529000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr15:73524200-73536600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:73524200-73546200	Weak transcription	Esophagus	oesophagus
38	chr15:73524200-73547000	Weak transcription	Ovary	ovary
39	chr15:73524400-73526400	Enhancers	Fetal Brain Female	brain
40	chr15:73524400-73528400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:73524400-73531400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr15:73524400-73542200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr15:73524600-73530200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:73524800-73525800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr15:73524800-73526200	Enhancers	Fetal Stomach	stomach
46	chr15:73524800-73528800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:73524800-73538400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:73525000-73526000	Weak transcription	HSMMtube	muscle
49	chr15:73525000-73526000	Weak transcription	Osteobl	bone
50	chr15:73525000-73526400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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