Variant report

Variant	rs2680341
Chromosome Location	chr15:73598884-73598885
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73598014..73598904-chr15:73928513..73929048,2	K562	blood:
2	chr15:73598029..73598944-chr15:73992348..73993218,4	K562	blood:
3	chr15:73598394..73598898-chr15:73823428..73824292,2	K562	blood:
4	chr15:73597949..73598920-chr15:73928445..73929381,7	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1017808	0.84[ASN][1000 genomes]
rs11072407	0.86[ASN][1000 genomes]
rs11072408	0.88[ASN][1000 genomes]
rs11072411	0.95[ASN][1000 genomes]
rs11072412	0.96[ASN][1000 genomes]
rs1119251	0.80[ASN][1000 genomes]
rs11636981	0.81[ASN][1000 genomes]
rs12439852	0.96[ASN][1000 genomes]
rs12440576	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12442755	0.86[ASN][1000 genomes]
rs12591304	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12901272	0.86[ASN][1000 genomes]
rs1564347	0.81[ASN][1000 genomes]
rs1878940	0.95[ASN][1000 genomes]
rs2252725	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2292915	0.86[ASN][1000 genomes]
rs2415145	0.88[ASN][1000 genomes]
rs2415146	0.88[ASN][1000 genomes]
rs2660821	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2680338	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2680340	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34456824	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35348961	0.88[ASN][1000 genomes]
rs35391014	0.82[ASN][1000 genomes]
rs35608416	0.88[ASN][1000 genomes]
rs35778649	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3743496	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3784795	0.96[ASN][1000 genomes]
rs3859014	0.81[AMR][1000 genomes]
rs3859015	0.80[AMR][1000 genomes]
rs472681	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4776631	0.95[ASN][1000 genomes]
rs486267	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs489531	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs520824	0.94[ASN][1000 genomes]
rs531019	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs549253	0.95[ASN][1000 genomes]
rs559260	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs563076	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs564765	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs570001	0.84[ASN][1000 genomes]
rs576813	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62015498	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8039418	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:73568600-73600800	Strong transcription	Rectal Mucosa Donor 29	rectum
3	chr15:73571200-73601400	Strong transcription	Fetal Stomach	stomach
4	chr15:73585000-73599400	Strong transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:73585400-73599600	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:73586800-73601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:73588800-73601400	Strong transcription	Fetal Intestine Large	intestine
8	chr15:73588800-73601800	Strong transcription	Fetal Intestine Small	intestine
9	chr15:73593200-73601800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:73593200-73602000	Strong transcription	Aorta	Aorta
11	chr15:73595400-73600000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:73595400-73603800	Weak transcription	Spleen	Spleen
13	chr15:73595600-73601600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:73595600-73610200	Weak transcription	Fetal Brain Male	brain
15	chr15:73596200-73599800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:73596400-73599000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:73596400-73611000	Weak transcription	Brain Anterior Caudate	brain
18	chr15:73596600-73599200	Weak transcription	Pancreas	Pancrea
19	chr15:73596600-73610000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:73596600-73610200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:73596800-73602200	Weak transcription	Lung	lung
22	chr15:73596800-73609600	Weak transcription	Fetal Lung	lung
23	chr15:73596800-73616800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr15:73597000-73599200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:73597000-73599200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:73597000-73599600	Weak transcription	Fetal Brain Female	brain
27	chr15:73597000-73600000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:73597000-73600000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:73597000-73601000	Weak transcription	Fetal Kidney	kidney
30	chr15:73597000-73601000	Weak transcription	Ovary	ovary
31	chr15:73597000-73606000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:73597000-73609600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr15:73597000-73610000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:73597200-73599200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr15:73597200-73599400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:73597200-73602200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr15:73597200-73603600	Weak transcription	Fetal Muscle Leg	muscle
38	chr15:73597400-73603200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:73598000-73610400	Weak transcription	Brain Germinal Matrix	brain
40	chr15:73598200-73601400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr15:73598200-73601600	Strong transcription	Stomach Smooth Muscle	stomach
42	chr15:73598200-73602000	Weak transcription	Gastric	stomach
43	chr15:73598200-73622800	Weak transcription	Right Atrium	heart
44	chr15:73598400-73599200	Weak transcription	Colonic Mucosa	Colon
45	chr15:73598400-73599400	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr15:73598400-73599600	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr15:73598400-73602000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:73598600-73610800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr15:73598800-73599200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:73598800-73600400	Weak transcription	Brain Inferior Temporal Lobe	brain

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