Variant report

Variant	rs472681
Chromosome Location	chr15:73589086-73589087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:73589070-73589290	A549	lung:	n/a	n/a
2	CEBPB	chr15:73589025-73589230	Hela-S3	cervix:	n/a	n/a
3	MYC	chr15:73588991-73589268	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73586710..73589263-chr15:73924586..73926850,3	MCF-7	breast:

Variant related genes	Relation type
NEO1	TF binding region
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11072407	0.82[ASN][1000 genomes]
rs11072408	0.83[ASN][1000 genomes]
rs11072411	0.90[ASN][1000 genomes]
rs11072412	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11072415	0.83[ASN][1000 genomes]
rs12439852	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12440576	0.96[ASN][1000 genomes]
rs12442755	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12591304	0.87[ASN][1000 genomes]
rs12901272	0.80[ASN][1000 genomes]
rs1878940	0.91[ASN][1000 genomes]
rs2252725	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2292915	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2415145	0.83[ASN][1000 genomes]
rs2415146	0.83[ASN][1000 genomes]
rs2660821	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2680338	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2680340	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2680341	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34456824	0.90[ASN][1000 genomes]
rs35348961	0.83[ASN][1000 genomes]
rs35608416	0.82[ASN][1000 genomes]
rs35778649	0.90[ASN][1000 genomes]
rs3743496	0.91[ASN][1000 genomes]
rs3784795	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3859014	0.85[ASN][1000 genomes]
rs3859015	0.85[ASN][1000 genomes]
rs476846	0.83[ASN][1000 genomes]
rs4776631	0.89[ASN][1000 genomes]
rs486267	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs488156	0.83[ASN][1000 genomes]
rs489531	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs491742	0.81[ASN][1000 genomes]
rs492362	0.83[ASN][1000 genomes]
rs498005	0.83[ASN][1000 genomes]
rs498868	0.82[ASN][1000 genomes]
rs519946	0.83[ASN][1000 genomes]
rs519970	0.83[ASN][1000 genomes]
rs520824	0.87[ASN][1000 genomes]
rs531019	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs549253	0.87[ASN][1000 genomes]
rs559260	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs563076	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs564765	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs568435	0.83[ASN][1000 genomes]
rs569532	0.82[ASN][1000 genomes]
rs570001	0.94[ASN][1000 genomes]
rs573397	0.83[ASN][1000 genomes]
rs576813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62015498	0.88[ASN][1000 genomes]
rs72741448	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:73552800-73598400	Weak transcription	Small Intestine	intestine
4	chr15:73560800-73597200	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr15:73563200-73598600	Weak transcription	Stomach Mucosa	stomach
6	chr15:73563600-73593600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:73566400-73597800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:73568600-73600800	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr15:73570200-73597000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:73570400-73597000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:73571200-73601400	Strong transcription	Fetal Stomach	stomach
12	chr15:73574000-73596800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:73576400-73594600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:73577800-73598200	Strong transcription	Duodenum Mucosa	Duodenum
15	chr15:73578200-73590600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:73579000-73590400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:73579200-73598200	Weak transcription	Psoas Muscle	Psoas
18	chr15:73579800-73591400	Strong transcription	Rectal Smooth Muscle	rectum
19	chr15:73580400-73594400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:73581600-73598000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:73582000-73589400	Weak transcription	Fetal Brain Male	brain
22	chr15:73582000-73590400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:73582000-73590600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:73582000-73595200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr15:73582000-73598000	Weak transcription	Fetal Heart	heart
26	chr15:73582200-73589400	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:73582200-73590600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr15:73582200-73590800	Weak transcription	A549	lung
29	chr15:73582600-73590800	Weak transcription	Fetal Kidney	kidney
30	chr15:73582800-73596800	Strong transcription	Fetal Lung	lung
31	chr15:73583400-73590800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr15:73583400-73597000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr15:73583400-73598400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:73583600-73590600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:73583600-73590800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:73583600-73590800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:73584600-73598000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:73584800-73597000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:73585000-73599400	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:73585400-73597200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr15:73585400-73599600	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:73585600-73589800	Strong transcription	Lung	lung
43	chr15:73585600-73591400	Strong transcription	Fetal Muscle Leg	muscle
44	chr15:73585600-73591600	Strong transcription	Aorta	Aorta
45	chr15:73585600-73591600	Strong transcription	Pancreas	Pancrea
46	chr15:73585600-73592000	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr15:73585600-73597000	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr15:73585800-73591400	Strong transcription	Brain Cingulate Gyrus	brain
49	chr15:73586400-73590200	Weak transcription	Esophagus	oesophagus
50	chr15:73586400-73590600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links