Variant report

Variant	rs498868
Chromosome Location	chr15:73625519-73625520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73618101..73621318-chr15:73623382..73626279,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11072405	0.81[CEU][hapmap]
rs11072415	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12440576	0.85[ASN][1000 genomes]
rs12442755	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1585766	0.81[CEU][hapmap]
rs1979409	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2292915	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2660821	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2660824	0.96[CEU][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2680340	0.82[ASN][1000 genomes]
rs3743496	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs3826043	0.85[ASN][1000 genomes]
rs3859014	0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs3859015	0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs472681	0.82[ASN][1000 genomes]
rs476846	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs488156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs491742	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs492362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs498005	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs519946	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs519970	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs520824	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs549253	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs568435	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs569532	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs570001	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs573397	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs576813	0.81[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7177758	0.81[CEU][hapmap]
rs72741448	0.83[ASN][1000 genomes]
rs8039418	0.81[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73617200-73625800	Weak transcription	Fetal Intestine Small	intestine
2	chr15:73617800-73634600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:73621200-73632600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:73621200-73634000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:73622000-73634000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:73622200-73630000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:73622200-73634400	Weak transcription	Brain Germinal Matrix	brain
8	chr15:73623000-73628000	Weak transcription	Fetal Brain Female	brain
9	chr15:73623200-73627000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:73623200-73627200	Weak transcription	Left Ventricle	heart
11	chr15:73623200-73627800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:73623200-73628000	Weak transcription	Right Atrium	heart
13	chr15:73623600-73626000	Weak transcription	Fetal Heart	heart
14	chr15:73623600-73627200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:73623600-73635400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr15:73623800-73632000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:73624000-73635400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:73624600-73625800	Enhancers	Spleen	Spleen
19	chr15:73624600-73635200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:73624600-73635600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:73624800-73626400	Weak transcription	Right Ventricle	heart
22	chr15:73624800-73632400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:73624800-73632600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr15:73625000-73626000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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