Variant report

Variant	rs570001
Chromosome Location	chr15:73608221-73608222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73606322..73609750-chr15:73610871..73613707,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11072411	0.86[ASN][1000 genomes]
rs11072412	0.86[ASN][1000 genomes]
rs11072415	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12439852	0.86[ASN][1000 genomes]
rs12440576	0.98[ASN][1000 genomes]
rs12442755	0.94[ASN][1000 genomes]
rs12591304	0.88[ASN][1000 genomes]
rs1878940	0.87[ASN][1000 genomes]
rs1979409	0.84[EUR][1000 genomes]
rs2292915	0.94[ASN][1000 genomes]
rs2660821	0.94[ASN][1000 genomes]
rs2660824	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2680338	0.84[ASN][1000 genomes]
rs2680340	0.94[ASN][1000 genomes]
rs2680341	0.84[ASN][1000 genomes]
rs34456824	0.86[ASN][1000 genomes]
rs35778649	0.86[ASN][1000 genomes]
rs3743496	0.92[ASN][1000 genomes]
rs3784795	0.85[ASN][1000 genomes]
rs3859014	0.86[ASN][1000 genomes]
rs3859015	0.86[ASN][1000 genomes]
rs472681	0.94[ASN][1000 genomes]
rs476846	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4776631	0.84[ASN][1000 genomes]
rs486267	0.85[ASN][1000 genomes]
rs488156	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs491742	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs492362	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs498005	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs498868	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs519946	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs519970	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs520824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs549253	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs559260	0.86[ASN][1000 genomes]
rs563076	0.86[ASN][1000 genomes]
rs564765	0.82[ASN][1000 genomes]
rs568435	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs569532	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs573397	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs576813	0.94[ASN][1000 genomes]
rs62015498	0.84[ASN][1000 genomes]
rs72741448	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73595600-73610200	Weak transcription	Fetal Brain Male	brain
2	chr15:73596400-73611000	Weak transcription	Brain Anterior Caudate	brain
3	chr15:73596600-73610000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:73596600-73610200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:73596800-73609600	Weak transcription	Fetal Lung	lung
6	chr15:73596800-73616800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:73597000-73609600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:73597000-73610000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:73598000-73610400	Weak transcription	Brain Germinal Matrix	brain
10	chr15:73598200-73622800	Weak transcription	Right Atrium	heart
11	chr15:73598600-73610800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:73598800-73610800	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:73598800-73620000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:73599600-73610800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:73600600-73611600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:73600800-73610800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:73601000-73617800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:73601400-73608800	Weak transcription	Fetal Intestine Large	intestine
19	chr15:73601400-73610000	Weak transcription	Fetal Stomach	stomach
20	chr15:73601400-73611800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:73601600-73610400	Weak transcription	Fetal Brain Female	brain
22	chr15:73601600-73615600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:73602000-73610000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:73602000-73611000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:73602000-73611400	Weak transcription	Aorta	Aorta
26	chr15:73605000-73610200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:73606200-73610200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:73607600-73610200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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