The 2.0 version of rSNPBase

Variant report

Variant rs559260
Chromosome Location chr15:73598232-73598233
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:73536200-73602000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
2 chr15:73552800-73598400 Weak transcription Small Intestine intestine
3 chr15:73563200-73598600 Weak transcription Stomach Mucosa stomach
4 chr15:73568600-73600800 Strong transcription Rectal Mucosa Donor 29 rectum
5 chr15:73571200-73601400 Strong transcription Fetal Stomach stomach
6 chr15:73583400-73598400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
7 chr15:73585000-73599400 Strong transcription Skeletal Muscle Male skeletal muscle
8 chr15:73585400-73599600 Strong transcription Cortex derived primary cultured neurospheres brain
9 chr15:73586800-73601200 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr15:73588600-73598600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr15:73588800-73601400 Strong transcription Fetal Intestine Large intestine
12 chr15:73588800-73601800 Strong transcription Fetal Intestine Small intestine
13 chr15:73591400-73598600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr15:73593200-73601800 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr15:73593200-73602000 Strong transcription Aorta Aorta
16 chr15:73593400-73598600 Weak transcription A549 lung
17 chr15:73595400-73598600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr15:73595400-73600000 Weak transcription H9 Cell Line embryonic stem cell
19 chr15:73595400-73603800 Weak transcription Spleen Spleen
20 chr15:73595600-73598600 Weak transcription Placenta Amnion Placenta Amnion
21 chr15:73595600-73601600 Strong transcription Fetal Adrenal Gland Adrenal Gland
22 chr15:73595600-73610200 Weak transcription Fetal Brain Male brain
23 chr15:73596200-73598600 Weak transcription iPS-18 Cell Line embryonic stem cell
24 chr15:73596200-73599800 Weak transcription Rectal Smooth Muscle rectum
25 chr15:73596400-73599000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr15:73596400-73611000 Weak transcription Brain Anterior Caudate brain
27 chr15:73596600-73598800 Enhancers Primary monocytes fromperipheralblood blood
28 chr15:73596600-73599200 Weak transcription Pancreas Pancrea
29 chr15:73596600-73610000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr15:73596600-73610200 Weak transcription HUES64 Cell Line embryonic stem cell
31 chr15:73596800-73598600 Weak transcription Liver Liver
32 chr15:73596800-73598600 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr15:73596800-73602200 Weak transcription Lung lung
34 chr15:73596800-73609600 Weak transcription Fetal Lung lung
35 chr15:73596800-73616800 Weak transcription HUES48 Cell Line embryonic stem cell
36 chr15:73597000-73599200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr15:73597000-73599200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr15:73597000-73599600 Weak transcription Fetal Brain Female brain
39 chr15:73597000-73600000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr15:73597000-73600000 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr15:73597000-73601000 Weak transcription Fetal Kidney kidney
42 chr15:73597000-73601000 Weak transcription Ovary ovary
43 chr15:73597000-73606000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr15:73597000-73609600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr15:73597000-73610000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr15:73597200-73599200 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr15:73597200-73599400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr15:73597200-73602200 Weak transcription Fetal Muscle Trunk muscle
49 chr15:73597200-73603600 Weak transcription Fetal Muscle Leg muscle
50 chr15:73597400-73598600 Enhancers Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015