Variant report

Variant	rs4777592
Chromosome Location	chr15:73434656-73434657
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1017808	0.87[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10518997	1.00[YRI][hapmap]
rs11072405	0.86[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs11072407	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11072408	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11072411	0.86[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11072412	0.82[ASN][1000 genomes]
rs1119251	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11634045	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11636981	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11856537	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12439852	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12440576	0.81[AFR][1000 genomes]
rs12442755	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs12591304	0.83[AFR][1000 genomes]
rs12594776	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12595434	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes]
rs12901272	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12901649	0.90[CHB][hapmap];0.92[ASN][1000 genomes]
rs12912737	0.92[ASN][1000 genomes]
rs1382782	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1564347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1585766	0.86[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs16957683	0.87[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1878940	0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1904335	0.93[ASN][1000 genomes]
rs2061890	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2252725	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs2292915	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs2415142	0.96[ASN][1000 genomes]
rs2415145	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2415146	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2660821	0.81[CHB][hapmap]
rs2680338	0.80[ASN][1000 genomes]
rs28742992	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34456824	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34953385	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35348961	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35391014	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35608416	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35778649	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs36072085	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3743496	0.86[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs3784795	0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3859014	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs3859015	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs4776623	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4776631	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4777585	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4777587	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4777588	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs486267	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs489531	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs559260	0.82[ASN][1000 genomes]
rs563076	0.82[ASN][1000 genomes]
rs576813	0.87[CHB][hapmap]
rs59628124	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62015498	0.83[AFR][1000 genomes]
rs6495045	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6495046	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6495050	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495051	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6495052	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6495053	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6495057	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495058	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7163543	0.82[CEU][hapmap];0.85[CHB][hapmap]
rs7168555	0.95[CEU][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7173710	0.91[CEU][hapmap];0.81[CHB][hapmap]
rs7177758	0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs7184025	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7495084	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8032762	1.00[YRI][hapmap]
rs8039418	0.86[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs8043494	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs983067	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904341	chr15:73390790-73483718	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv527236	chr15:73421239-73469535	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73396400-73444600	Weak transcription	Psoas Muscle	Psoas
2	chr15:73401400-73480200	Weak transcription	Right Ventricle	heart
3	chr15:73403000-73443400	Weak transcription	Fetal Kidney	kidney
4	chr15:73404200-73442600	Weak transcription	Left Ventricle	heart
5	chr15:73408000-73443400	Weak transcription	Adipose Nuclei	Adipose
6	chr15:73413200-73437200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:73413600-73446400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:73414000-73437000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:73414000-73440000	Weak transcription	Fetal Brain Female	brain
10	chr15:73414200-73445600	Weak transcription	Brain Substantia Nigra	brain
11	chr15:73414400-73458200	Weak transcription	Colonic Mucosa	Colon
12	chr15:73414600-73436600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:73415400-73446600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:73416000-73453200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:73416600-73444600	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:73416600-73444600	Weak transcription	Lung	lung
17	chr15:73416800-73448800	Weak transcription	Ovary	ovary
18	chr15:73417000-73443000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:73421000-73443200	Weak transcription	Brain Angular Gyrus	brain
20	chr15:73423400-73438200	Weak transcription	Brain Anterior Caudate	brain
21	chr15:73423400-73445400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:73423400-73448800	Weak transcription	Pancreas	Pancrea
23	chr15:73423600-73443200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:73423600-73444600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:73424200-73449200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:73424400-73435600	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:73425200-73447200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:73429000-73456600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:73429200-73449200	Weak transcription	Gastric	stomach
30	chr15:73429400-73434800	Weak transcription	Aorta	Aorta
31	chr15:73429400-73435000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:73429400-73447200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:73430200-73466600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr15:73431200-73434800	Weak transcription	Fetal Intestine Small	intestine
35	chr15:73431200-73435400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:73431400-73435800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr15:73431400-73443000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:73431800-73453800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr15:73432200-73437600	Weak transcription	Fetal Lung	lung
40	chr15:73432400-73434800	Weak transcription	Fetal Stomach	stomach
41	chr15:73432400-73435400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:73432600-73448600	Weak transcription	Fetal Brain Male	brain
43	chr15:73432800-73436200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:73433000-73435600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr15:73433200-73440000	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr15:73433600-73435000	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:73433800-73436800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr15:73434000-73435400	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr15:73434000-73436000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:73434200-73435600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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