Variant report

Variant	rs2660824
Chromosome Location	chr15:73618309-73618310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73618101..73621318-chr15:73623382..73626279,3	K562	blood:
2	chr15:73610006..73611757-chr15:73616928..73619892,2	K562	blood:
3	chr15:73567230..73569209-chr15:73616607..73619389,2	K562	blood:
4	chr15:73617280..73620267-chr15:73620708..73622245,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11072415	0.84[ASN][1000 genomes]
rs12442755	0.91[JPT][hapmap]
rs1979409	0.88[CEU][hapmap]
rs2292915	0.91[JPT][hapmap]
rs2660821	0.91[JPT][hapmap]
rs3743496	0.81[JPT][hapmap]
rs3859014	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs3859015	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs476846	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs488156	0.96[CEU][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs491742	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs492362	0.96[CEU][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs498005	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs498868	0.96[CEU][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs519946	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs519970	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs520824	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs549253	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs568435	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs569532	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs570001	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs573397	0.96[CEU][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs576813	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73598200-73622800	Weak transcription	Right Atrium	heart
2	chr15:73598800-73620000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr15:73611000-73620200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr15:73611400-73622200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73612000-73620200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:73612200-73623200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:73612400-73618400	Weak transcription	Brain Germinal Matrix	brain
8	chr15:73612400-73620200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:73612400-73623000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:73614000-73618600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:73614800-73618600	Strong transcription	Fetal Brain Female	brain
12	chr15:73615000-73622800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:73617200-73625800	Weak transcription	Fetal Intestine Small	intestine
14	chr15:73617400-73618400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:73617400-73618600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:73617400-73618800	Enhancers	Fetal Heart	heart
17	chr15:73617400-73623200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:73617600-73618400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr15:73617600-73618400	Enhancers	Fetal Muscle Leg	muscle
20	chr15:73617600-73618600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:73617600-73620200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:73617800-73618600	Enhancers	GM12878-XiMat	blood
23	chr15:73617800-73620800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:73617800-73634600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:73618000-73618400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:73618000-73618600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
27	chr15:73618000-73618800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:73618000-73618800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:73618200-73618400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:73618200-73618600	Weak transcription	Left Ventricle	heart
31	chr15:73618200-73618800	Enhancers	Right Ventricle	heart
32	chr15:73618200-73618800	Enhancers	HSMMtube	muscle
33	chr15:73618200-73620000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:73618200-73620400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr15:73618200-73622600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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