Variant report

Variant	rs9806395
Chromosome Location	chr15:52366265-52366266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52365247..52369257-chr15:52370072..52371646,3	MCF-7	breast:
2	chr15:52359987..52361803-chr15:52364183..52366513,2	K562	blood:
3	chr15:52360023..52361929-chr15:52364183..52367724,3	K562	blood:
4	chr15:52308069..52314807-chr15:52359242..52376066,34	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069956	Chromatin interaction
ENSG00000259438	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs732097	0.83[EUR][1000 genomes]
rs9806168	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs9806372	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530681	chr15:52297253-52390470	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv984198	chr15:52319726-52481137	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1039841	chr15:52357448-52381377	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52353200-52370800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:52353600-52368800	Weak transcription	HSMMtube	muscle
3	chr15:52356200-52368600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:52356200-52368800	Weak transcription	HUVEC	blood vessel
5	chr15:52356200-52369000	Weak transcription	Hela-S3	cervix
6	chr15:52356400-52368600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:52357200-52371200	Weak transcription	Spleen	Spleen
8	chr15:52357600-52368600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:52357600-52368600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr15:52357600-52369000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr15:52357600-52373200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:52357800-52368800	Weak transcription	NH-A	brain
13	chr15:52357800-52370800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:52358000-52369000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:52358600-52371000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:52358800-52368600	Weak transcription	HSMM	muscle
17	chr15:52358800-52368800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:52359200-52368800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:52362200-52367200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:52362400-52371000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:52362800-52368400	Weak transcription	A549	lung
22	chr15:52362800-52374600	Weak transcription	Small Intestine	intestine
23	chr15:52363800-52367600	Weak transcription	HMEC	breast
24	chr15:52364000-52368600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:52364200-52369000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:52364200-52369000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr15:52364400-52369000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:52364600-52366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:52364600-52367600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:52364600-52368600	Weak transcription	HepG2	liver
31	chr15:52364600-52368800	Weak transcription	Fetal Intestine Small	intestine
32	chr15:52364600-52368800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr15:52364600-52374000	Weak transcription	Pancreas	Pancrea
34	chr15:52364800-52366400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:52364800-52366600	Weak transcription	NHEK	skin
36	chr15:52364800-52368600	Weak transcription	Liver	Liver
37	chr15:52364800-52368600	Weak transcription	Fetal Intestine Large	intestine
38	chr15:52364800-52368800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr15:52365200-52369000	Weak transcription	Esophagus	oesophagus
40	chr15:52366000-52366400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links