Variant report

Variant	rs9806569
Chromosome Location	chr15:44633763-44633764
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10152314	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35842768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1044686	chr15:44489534-44697482	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1043822	chr15:44491220-44686957	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv1035386	chr15:44498905-44677174	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv569299	chr15:44598642-44776075	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	nsv904178	chr15:44609796-44724287	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv569300	chr15:44609796-44763598	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	nsv904179	chr15:44614684-44821843	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44582000-44639400	Weak transcription	Lung	lung
2	chr15:44582800-44672200	Weak transcription	HSMM	muscle
3	chr15:44583000-44639400	Weak transcription	Fetal Lung	lung
4	chr15:44583200-44639200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr15:44583800-44639200	Weak transcription	Brain Germinal Matrix	brain
6	chr15:44592800-44639800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr15:44593200-44639200	Weak transcription	K562	blood
8	chr15:44593200-44639400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:44593800-44639400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:44598600-44646800	Weak transcription	Right Ventricle	heart
11	chr15:44601600-44638600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr15:44602200-44638400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr15:44602400-44639400	Weak transcription	Gastric	stomach
14	chr15:44602400-44639600	Weak transcription	Pancreas	Pancrea
15	chr15:44607800-44639400	Weak transcription	Placenta	Placenta
16	chr15:44608000-44639800	Weak transcription	Brain Anterior Caudate	brain
17	chr15:44608800-44639200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:44609200-44639400	Weak transcription	Liver	Liver
19	chr15:44609800-44639600	Weak transcription	Aorta	Aorta
20	chr15:44615400-44638600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:44615400-44639600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:44616400-44639200	Weak transcription	Brain Angular Gyrus	brain
23	chr15:44616600-44639200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:44617800-44639000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr15:44618000-44638800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:44618000-44639400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:44618000-44639600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:44618000-44639800	Weak transcription	HepG2	liver
29	chr15:44618000-44642600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:44618000-44642800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr15:44618000-44643200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr15:44619000-44639600	Weak transcription	Colonic Mucosa	Colon
33	chr15:44619600-44636200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:44620200-44639400	Weak transcription	A549	lung
35	chr15:44620200-44639600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:44620400-44639400	Weak transcription	Spleen	Spleen
37	chr15:44621600-44639200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:44622800-44639600	Weak transcription	Dnd41	blood
39	chr15:44623200-44639200	Weak transcription	Adipose Nuclei	Adipose
40	chr15:44623400-44640000	Weak transcription	Brain Substantia Nigra	brain
41	chr15:44624200-44639600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr15:44624200-44640200	Weak transcription	Fetal Brain Male	brain
43	chr15:44624200-44642600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr15:44624400-44638400	Weak transcription	HUVEC	blood vessel
45	chr15:44624800-44639400	Weak transcription	Fetal Thymus	thymus
46	chr15:44624800-44639400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:44624800-44639600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr15:44625200-44639400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr15:44625600-44639400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:44626000-44639200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links