Variant report

Variant	rs980929
Chromosome Location	chr20:41407062-41407063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10485696	0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs114094	0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs17749217	0.81[CEU][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs17811425	0.80[CHD][hapmap];0.83[JPT][hapmap]
rs1885834	0.92[JPT][hapmap]
rs1973949	0.88[GIH][hapmap];0.92[JPT][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs208250	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs208254	0.82[CEU][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs73098060	0.81[ASN][1000 genomes]
rs73098063	0.83[ASN][1000 genomes]
rs73098070	0.81[ASN][1000 genomes]
rs8119733	0.86[CHD][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs980929	PPP1R16B	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41405800-41409600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41407000-41407400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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