Variant report

Variant	rs9809906
Chromosome Location	chr3:52985454-52985455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9815408	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv1818974	chr3:52966316-53096394	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52954000-53012200	Weak transcription	Esophagus	oesophagus
2	chr3:52954200-53012200	Weak transcription	Pancreas	Pancrea
3	chr3:52955200-52986400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr3:52956400-52986400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:52958200-52985800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:52961600-52987000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:52962400-52986600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:52962400-52998200	Weak transcription	Lung	lung
9	chr3:52962400-53001600	Weak transcription	Brain Angular Gyrus	brain
10	chr3:52962400-53007000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:52962400-53012400	Weak transcription	Adipose Nuclei	Adipose
12	chr3:52964200-52995400	Weak transcription	Gastric	stomach
13	chr3:52964400-52988200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:52964600-53012200	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:52965000-52986000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:52965000-52986800	Weak transcription	Thymus	Thymus
17	chr3:52965000-52998400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:52965000-53039800	Weak transcription	Left Ventricle	heart
19	chr3:52965200-52986600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:52965600-53008200	Weak transcription	GM12878-XiMat	blood
21	chr3:52966200-52985800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr3:52966400-52986000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:52966400-52986200	Weak transcription	Placenta	Placenta
24	chr3:52966400-53001600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:52968800-52986400	Weak transcription	Fetal Thymus	thymus
26	chr3:52969000-52986400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr3:52969000-53008000	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:52969200-52986400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr3:52969200-52991000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr3:52969200-52996200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr3:52969200-52997400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr3:52969400-52986600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:52972400-52986400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr3:52975000-53008000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:52975200-52986000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:52975200-52986400	Weak transcription	Primary T cells from cord blood	blood
37	chr3:52975200-53000600	Weak transcription	Hela-S3	cervix
38	chr3:52976400-52986400	Weak transcription	Primary B cells from cord blood	blood
39	chr3:52977000-52987000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr3:52977400-52986000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr3:52977400-52986000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:52977600-52985800	Weak transcription	Fetal Intestine Large	intestine
43	chr3:52977600-52986000	Weak transcription	Liver	Liver
44	chr3:52977600-52986400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:52977600-52986400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:52977600-53017000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr3:52977800-52986000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:52977800-52986000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr3:52977800-52986200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr3:52980400-52996600	Weak transcription	Psoas Muscle	Psoas

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