The 2.0 version of rSNPBase

Variant report

Variant rs9815408
Chromosome Location chr3:52975906-52975907
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52932000-52978000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr3:52941800-52980200 Weak transcription Psoas Muscle Psoas
3 chr3:52954000-53012200 Weak transcription Esophagus oesophagus
4 chr3:52954200-53012200 Weak transcription Pancreas Pancrea
5 chr3:52954800-52976800 Weak transcription Brain Germinal Matrix brain
6 chr3:52955200-52986400 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr3:52956400-52986400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr3:52958200-52985800 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr3:52960200-52979600 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr3:52961600-52987000 Weak transcription Monocytes-CD14+_RO01746 blood
11 chr3:52962400-52986600 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr3:52962400-52998200 Weak transcription Lung lung
13 chr3:52962400-53001600 Weak transcription Brain Angular Gyrus brain
14 chr3:52962400-53007000 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr3:52962400-53012400 Weak transcription Adipose Nuclei Adipose
16 chr3:52962600-52979400 Weak transcription Brain Cingulate Gyrus brain
17 chr3:52963000-52976400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr3:52964200-52984400 Weak transcription Fetal Stomach stomach
19 chr3:52964200-52995400 Weak transcription Gastric stomach
20 chr3:52964400-52976000 Weak transcription Fetal Intestine Large intestine
21 chr3:52964400-52984200 Weak transcription Rectal Smooth Muscle rectum
22 chr3:52964400-52988200 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr3:52964600-53012200 Weak transcription Fetal Muscle Leg muscle
24 chr3:52965000-52976600 Weak transcription Stomach Smooth Muscle stomach
25 chr3:52965000-52986000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr3:52965000-52986800 Weak transcription Thymus Thymus
27 chr3:52965000-52998400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr3:52965000-53039800 Weak transcription Left Ventricle heart
29 chr3:52965200-52976800 Weak transcription Duodenum Mucosa Duodenum
30 chr3:52965200-52986600 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr3:52965600-53008200 Weak transcription GM12878-XiMat blood
32 chr3:52966200-52976600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr3:52966200-52985800 Weak transcription Primary T cells fromperipheralblood blood
34 chr3:52966400-52976800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr3:52966400-52986000 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr3:52966400-52986200 Weak transcription Placenta Placenta
37 chr3:52966400-53001600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr3:52968800-52986400 Weak transcription Fetal Thymus thymus
39 chr3:52969000-52986400 Weak transcription Primary T regulatory cells fromperipheralblood blood
40 chr3:52969000-53008000 Weak transcription Colon Smooth Muscle Colon
41 chr3:52969200-52986400 Weak transcription Primary T helper naive cells fromperipheralblood blood
42 chr3:52969200-52991000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr3:52969200-52996200 Weak transcription Primary T killer memory cells from peripheral blood blood
44 chr3:52969200-52997400 Weak transcription Primary T helper naive cells from peripheral blood blood
45 chr3:52969400-52986600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr3:52969600-52976800 Weak transcription Liver Liver
47 chr3:52972200-52978000 Strong transcription Dnd41 blood
48 chr3:52972400-52986400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr3:52972800-52977400 Strong transcription Primary B cells from peripheral blood blood
50 chr3:52972800-52977800 Strong transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015