Variant report

Variant rs2878636
Chromosome Location chr3:52876087-52876088
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52854800-52888400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr3:52862000-52882600 Weak transcription Placenta Amnion Placenta Amnion
3 chr3:52865800-52878600 Weak transcription Small Intestine intestine
4 chr3:52866000-52884800 Weak transcription HMEC breast
5 chr3:52866200-52885200 Weak transcription NHEK skin
6 chr3:52866600-52879200 Weak transcription Osteobl bone
7 chr3:52866800-52876400 Strong transcription Monocytes-CD14+_RO01746 blood
8 chr3:52866800-52878200 Strong transcription Fetal Brain Female brain
9 chr3:52866800-52879600 Genic enhancers Fetal Thymus thymus
10 chr3:52867000-52876400 Strong transcription Primary monocytes fromperipheralblood blood
11 chr3:52867000-52881600 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr3:52867000-52881800 Weak transcription HUES64 Cell Line embryonic stem cell
13 chr3:52868000-52878800 Strong transcription Primary hematopoietic stem cells short term culture blood
14 chr3:52868000-52883200 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr3:52868400-52877800 Strong transcription Brain Germinal Matrix brain
16 chr3:52868800-52876800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr3:52869000-52878800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr3:52869000-52879400 Strong transcription Fetal Intestine Small intestine
19 chr3:52869000-52881800 Weak transcription Fetal Kidney kidney
20 chr3:52869600-52878600 Weak transcription NHDF-Ad bronchial
21 chr3:52869600-52879600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr3:52869600-52881800 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr3:52869800-52876600 Weak transcription iPS-18 Cell Line embryonic stem cell
24 chr3:52869800-52882000 Weak transcription H1 Cell Line embryonic stem cell
25 chr3:52869800-52884000 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr3:52870000-52878800 Genic enhancers Fetal Muscle Leg muscle
27 chr3:52870000-52901000 Weak transcription Fetal Brain Male brain
28 chr3:52870200-52876600 Strong transcription Fetal Stomach stomach
29 chr3:52870400-52876400 Strong transcription Duodenum Smooth Muscle Duodenum
30 chr3:52870400-52877400 Strong transcription Lung lung
31 chr3:52870600-52877000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr3:52870600-52877400 Strong transcription Adipose Nuclei Adipose
33 chr3:52870600-52879400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr3:52871200-52879800 Strong transcription Breast Myoepithelial Primary Cells Breast
35 chr3:52871600-52876600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr3:52871600-52877600 Strong transcription Brain Hippocampus Middle brain
37 chr3:52872200-52878800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr3:52872400-52876800 Strong transcription Aorta Aorta
39 chr3:52872400-52877000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr3:52872400-52877000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr3:52872600-52876600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr3:52872600-52876600 Strong transcription Brain Substantia Nigra brain
43 chr3:52872600-52877000 Strong transcription Ovary ovary
44 chr3:52872600-52877200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr3:52872600-52879000 Strong transcription Cortex derived primary cultured neurospheres brain
46 chr3:52872800-52877000 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr3:52872800-52877000 Strong transcription Rectal Mucosa Donor 29 rectum
48 chr3:52873000-52876600 Strong transcription Esophagus oesophagus
49 chr3:52873200-52877200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr3:52873400-52876800 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle

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