The 2.0 version of rSNPBase

Variant report

Variant rs2710316
Chromosome Location chr3:52968216-52968217
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52932000-52970000 Weak transcription H9 Cell Line embryonic stem cell
2 chr3:52932000-52978000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr3:52932200-52968600 Weak transcription Osteobl bone
4 chr3:52932200-52968800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr3:52932200-52968800 Weak transcription Fetal Brain Male brain
6 chr3:52932400-52968600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr3:52932400-52968600 Weak transcription NHDF-Ad bronchial
8 chr3:52932400-52968800 Weak transcription NHEK skin
9 chr3:52935600-52968600 Strong transcription Dnd41 blood
10 chr3:52941800-52980200 Weak transcription Psoas Muscle Psoas
11 chr3:52949000-52968800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr3:52952000-52968600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
13 chr3:52954000-53012200 Weak transcription Esophagus oesophagus
14 chr3:52954200-53012200 Weak transcription Pancreas Pancrea
15 chr3:52954400-52968600 Weak transcription iPS-18 Cell Line embryonic stem cell
16 chr3:52954800-52968400 Weak transcription Brain Substantia Nigra brain
17 chr3:52954800-52976800 Weak transcription Brain Germinal Matrix brain
18 chr3:52955200-52968600 Weak transcription HUES64 Cell Line embryonic stem cell
19 chr3:52955200-52968600 Weak transcription Colon Smooth Muscle Colon
20 chr3:52955200-52986400 Weak transcription Primary T killer naive cells fromperipheralblood blood
21 chr3:52955800-52968800 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr3:52956000-52968600 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr3:52956000-52973800 Weak transcription iPS-20b Cell Line embryonic stem cell
24 chr3:52956200-52968400 Weak transcription Brain Hippocampus Middle brain
25 chr3:52956400-52986400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr3:52957200-52974800 Weak transcription Primary T cells from cord blood blood
27 chr3:52958200-52985800 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr3:52960200-52979600 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr3:52961400-52968800 Weak transcription Primary neutrophils fromperipheralblood blood
30 chr3:52961600-52987000 Weak transcription Monocytes-CD14+_RO01746 blood
31 chr3:52962400-52968400 Weak transcription Primary T helper naive cells fromperipheralblood blood
32 chr3:52962400-52968600 Weak transcription Brain Inferior Temporal Lobe brain
33 chr3:52962400-52968600 Weak transcription A549 lung
34 chr3:52962400-52969800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
35 chr3:52962400-52969800 Weak transcription HMEC breast
36 chr3:52962400-52970000 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr3:52962400-52975800 Weak transcription HepG2 liver
38 chr3:52962400-52986600 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr3:52962400-52998200 Weak transcription Lung lung
40 chr3:52962400-53001600 Weak transcription Brain Angular Gyrus brain
41 chr3:52962400-53007000 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr3:52962400-53012400 Weak transcription Adipose Nuclei Adipose
43 chr3:52962600-52968600 Weak transcription iPS-15b Cell Line embryonic stem cell
44 chr3:52962600-52979400 Weak transcription Brain Cingulate Gyrus brain
45 chr3:52963000-52968400 Weak transcription Fetal Thymus thymus
46 chr3:52963000-52974800 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr3:52963000-52976400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
48 chr3:52963800-52968600 Strong transcription Primary T helper cells PMA-I stimulated --
49 chr3:52963800-52968600 Weak transcription K562 blood
50 chr3:52964200-52968600 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015