The 2.0 version of rSNPBase

Variant report

Variant rs4687669
Chromosome Location chr3:52878087-52878088
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52854800-52888400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr3:52862000-52882600 Weak transcription Placenta Amnion Placenta Amnion
3 chr3:52865800-52878600 Weak transcription Small Intestine intestine
4 chr3:52866000-52884800 Weak transcription HMEC breast
5 chr3:52866200-52885200 Weak transcription NHEK skin
6 chr3:52866600-52879200 Weak transcription Osteobl bone
7 chr3:52866800-52878200 Strong transcription Fetal Brain Female brain
8 chr3:52866800-52879600 Genic enhancers Fetal Thymus thymus
9 chr3:52867000-52881600 Weak transcription iPS-15b Cell Line embryonic stem cell
10 chr3:52867000-52881800 Weak transcription HUES64 Cell Line embryonic stem cell
11 chr3:52868000-52878800 Strong transcription Primary hematopoietic stem cells short term culture blood
12 chr3:52868000-52883200 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr3:52869000-52878800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr3:52869000-52879400 Strong transcription Fetal Intestine Small intestine
15 chr3:52869000-52881800 Weak transcription Fetal Kidney kidney
16 chr3:52869600-52878600 Weak transcription NHDF-Ad bronchial
17 chr3:52869600-52879600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
18 chr3:52869600-52881800 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr3:52869800-52882000 Weak transcription H1 Cell Line embryonic stem cell
20 chr3:52869800-52884000 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr3:52870000-52878800 Genic enhancers Fetal Muscle Leg muscle
22 chr3:52870000-52901000 Weak transcription Fetal Brain Male brain
23 chr3:52870600-52879400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr3:52871200-52879800 Strong transcription Breast Myoepithelial Primary Cells Breast
25 chr3:52872200-52878800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr3:52872600-52879000 Strong transcription Cortex derived primary cultured neurospheres brain
27 chr3:52873400-52879600 Weak transcription GM12878-XiMat blood
28 chr3:52873400-52891600 Strong transcription Primary T cells from cord blood blood
29 chr3:52873400-52892000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
30 chr3:52873600-52881800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr3:52873600-52882600 Weak transcription Primary T killer naive cells fromperipheralblood blood
32 chr3:52873600-52889000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr3:52873800-52878800 Strong transcription Primary T helper naive cells fromperipheralblood blood
34 chr3:52873800-52882200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
35 chr3:52873800-52889000 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr3:52873800-52891400 Strong transcription Primary T regulatory cells fromperipheralblood blood
37 chr3:52874000-52878200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr3:52874200-52878200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr3:52874200-52878800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
40 chr3:52874200-52879600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
41 chr3:52874200-52883800 Enhancers Psoas Muscle Psoas
42 chr3:52874400-52879800 Genic enhancers Fetal Muscle Trunk muscle
43 chr3:52874600-52879000 Strong transcription Primary T cells fromperipheralblood blood
44 chr3:52874800-52880200 Enhancers Right Atrium heart
45 chr3:52875000-52878200 Strong transcription Primary T helper cells PMA-I stimulated --
46 chr3:52875000-52878200 Genic enhancers Right Ventricle heart
47 chr3:52875000-52878800 Strong transcription Primary B cells from peripheral blood blood
48 chr3:52875200-52879400 Weak transcription HSMM muscle
49 chr3:52875600-52880200 Enhancers HSMMtube muscle
50 chr3:52875800-52882600 Weak transcription NH-A brain

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Last update: Aug 31, 2015