Variant report

Variant rs2577830
Chromosome Location chr3:52652293-52652294
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52587200-52719200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr3:52591000-52688000 Weak transcription iPS-15b Cell Line embryonic stem cell
3 chr3:52592200-52719200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr3:52634800-52654400 Strong transcription HUES48 Cell Line embryonic stem cell
5 chr3:52634800-52654400 Strong transcription Sigmoid Colon Sigmoid Colon
6 chr3:52634800-52686000 Strong transcription Duodenum Mucosa Duodenum
7 chr3:52635600-52654200 Strong transcription Primary T helper cells fromperipheralblood blood
8 chr3:52635600-52655200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr3:52635800-52654400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
10 chr3:52635800-52654600 Strong transcription Primary T cells fromperipheralblood blood
11 chr3:52635800-52654600 Strong transcription Adipose Nuclei Adipose
12 chr3:52635800-52657800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr3:52636000-52653200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
14 chr3:52636000-52653200 Strong transcription Fetal Intestine Large intestine
15 chr3:52636000-52654400 Strong transcription Fetal Thymus thymus
16 chr3:52636000-52655200 Strong transcription Fetal Muscle Trunk muscle
17 chr3:52636000-52703800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr3:52636000-52704000 Strong transcription Placenta Placenta
19 chr3:52636200-52653600 Strong transcription Primary T regulatory cells fromperipheralblood blood
20 chr3:52636200-52703200 Strong transcription Primary monocytes fromperipheralblood blood
21 chr3:52636400-52654600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr3:52636600-52654800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr3:52636600-52669200 Strong transcription Primary B cells from peripheral blood blood
24 chr3:52636600-52673600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr3:52636600-52677400 Weak transcription Pancreas Pancrea
26 chr3:52636800-52652800 Strong transcription Fetal Brain Female brain
27 chr3:52636800-52654600 Strong transcription Primary hematopoietic stem cells short term culture blood
28 chr3:52636800-52654800 Strong transcription Fetal Muscle Leg muscle
29 chr3:52636800-52662800 Strong transcription Fetal Adrenal Gland Adrenal Gland
30 chr3:52636800-52703600 Strong transcription Monocytes-CD14+_RO01746 blood
31 chr3:52637200-52715800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr3:52637400-52654200 Strong transcription Primary T cells from cord blood blood
33 chr3:52637800-52654200 Strong transcription Thymus Thymus
34 chr3:52638800-52658400 Weak transcription Esophagus oesophagus
35 chr3:52639600-52670000 Strong transcription Dnd41 blood
36 chr3:52640200-52655800 Weak transcription Lung lung
37 chr3:52640600-52663200 Strong transcription iPS-20b Cell Line embryonic stem cell
38 chr3:52640800-52652600 Strong transcription HUES6 Cell Line embryonic stem cell
39 chr3:52640800-52684600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr3:52641000-52670800 Weak transcription Stomach Mucosa stomach
41 chr3:52641200-52654600 Strong transcription Rectal Mucosa Donor 29 rectum
42 chr3:52641400-52654400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr3:52641600-52654600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr3:52641600-52664800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr3:52641800-52652600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr3:52641800-52653800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr3:52642200-52657600 Weak transcription Brain Angular Gyrus brain
48 chr3:52642400-52652600 Strong transcription Breast Myoepithelial Primary Cells Breast
49 chr3:52642400-52652600 Strong transcription Primary T helper cells PMA-I stimulated --
50 chr3:52642400-52671000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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