Variant report

Variant rs2590841
Chromosome Location chr3:52644133-52644134
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52587200-52719200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr3:52591000-52688000 Weak transcription iPS-15b Cell Line embryonic stem cell
3 chr3:52592200-52719200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr3:52634200-52647800 Strong transcription Primary T helper naive cells fromperipheralblood blood
5 chr3:52634800-52654400 Strong transcription HUES48 Cell Line embryonic stem cell
6 chr3:52634800-52654400 Strong transcription Sigmoid Colon Sigmoid Colon
7 chr3:52634800-52686000 Strong transcription Duodenum Mucosa Duodenum
8 chr3:52635400-52649000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr3:52635600-52654200 Strong transcription Primary T helper cells fromperipheralblood blood
10 chr3:52635600-52655200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr3:52635800-52654400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
12 chr3:52635800-52654600 Strong transcription Primary T cells fromperipheralblood blood
13 chr3:52635800-52654600 Strong transcription Adipose Nuclei Adipose
14 chr3:52635800-52657800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr3:52636000-52646800 Strong transcription Fetal Lung lung
16 chr3:52636000-52651000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr3:52636000-52653200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
18 chr3:52636000-52653200 Strong transcription Fetal Intestine Large intestine
19 chr3:52636000-52654400 Strong transcription Fetal Thymus thymus
20 chr3:52636000-52655200 Strong transcription Fetal Muscle Trunk muscle
21 chr3:52636000-52703800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr3:52636000-52704000 Strong transcription Placenta Placenta
23 chr3:52636200-52653600 Strong transcription Primary T regulatory cells fromperipheralblood blood
24 chr3:52636200-52703200 Strong transcription Primary monocytes fromperipheralblood blood
25 chr3:52636400-52648000 Strong transcription Cortex derived primary cultured neurospheres brain
26 chr3:52636400-52654600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr3:52636600-52644400 Strong transcription Primary neutrophils fromperipheralblood blood
28 chr3:52636600-52644400 Strong transcription Fetal Kidney kidney
29 chr3:52636600-52645000 Weak transcription Placenta Amnion Placenta Amnion
30 chr3:52636600-52649200 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr3:52636600-52654800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr3:52636600-52669200 Strong transcription Primary B cells from peripheral blood blood
33 chr3:52636600-52673600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr3:52636600-52677400 Weak transcription Pancreas Pancrea
35 chr3:52636800-52646000 Strong transcription Primary hematopoietic stem cells blood
36 chr3:52636800-52647200 Strong transcription Primary B cells from cord blood blood
37 chr3:52636800-52652800 Strong transcription Fetal Brain Female brain
38 chr3:52636800-52654600 Strong transcription Primary hematopoietic stem cells short term culture blood
39 chr3:52636800-52654800 Strong transcription Fetal Muscle Leg muscle
40 chr3:52636800-52662800 Strong transcription Fetal Adrenal Gland Adrenal Gland
41 chr3:52636800-52703600 Strong transcription Monocytes-CD14+_RO01746 blood
42 chr3:52637200-52715800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr3:52637400-52646600 Strong transcription GM12878-XiMat blood
44 chr3:52637400-52654200 Strong transcription Primary T cells from cord blood blood
45 chr3:52637600-52645400 Weak transcription Primary T killer memory cells from peripheral blood blood
46 chr3:52637800-52654200 Strong transcription Thymus Thymus
47 chr3:52638800-52658400 Weak transcription Esophagus oesophagus
48 chr3:52639600-52645600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
49 chr3:52639600-52670000 Strong transcription Dnd41 blood
50 chr3:52640000-52644800 Strong transcription HUES64 Cell Line embryonic stem cell

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