The 2.0 version of rSNPBase

Variant report

Variant rs7649515
Chromosome Location chr3:52865612-52865613
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52848400-52865800 Weak transcription Ovary ovary
2 chr3:52850200-52868400 Weak transcription Colonic Mucosa Colon
3 chr3:52852200-52869200 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr3:52852800-52869200 Weak transcription Primary B cells from cord blood blood
5 chr3:52853000-52868000 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr3:52854200-52874200 Weak transcription H9 Cell Line embryonic stem cell
7 chr3:52854800-52869200 Weak transcription Primary T helper cells fromperipheralblood blood
8 chr3:52854800-52888400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr3:52856000-52875000 Weak transcription Fetal Intestine Large intestine
10 chr3:52856400-52868200 Weak transcription Fetal Lung lung
11 chr3:52857000-52868600 Weak transcription Primary B cells from peripheral blood blood
12 chr3:52858000-52867800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr3:52858000-52868400 Weak transcription Brain Germinal Matrix brain
14 chr3:52858400-52866800 Weak transcription Fetal Brain Female brain
15 chr3:52858400-52867200 Weak transcription Primary T cells fromperipheralblood blood
16 chr3:52858400-52867600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
17 chr3:52858600-52866800 Weak transcription Monocytes-CD14+_RO01746 blood
18 chr3:52858600-52867000 Weak transcription Primary monocytes fromperipheralblood blood
19 chr3:52858800-52866800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr3:52858800-52868800 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr3:52858800-52868800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
22 chr3:52858800-52869200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr3:52859400-52869000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr3:52860200-52869000 Weak transcription Fetal Intestine Small intestine
25 chr3:52861200-52866400 Weak transcription Primary T cells from cord blood blood
26 chr3:52861200-52868800 Weak transcription Lung lung
27 chr3:52862000-52869200 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr3:52862000-52882600 Weak transcription Placenta Amnion Placenta Amnion
29 chr3:52863200-52866200 Flanking Active TSS HepG2 liver
30 chr3:52863200-52872600 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr3:52863400-52865800 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr3:52863400-52866000 Active TSS Liver Liver
33 chr3:52863800-52866200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr3:52863800-52866200 Enhancers Gastric stomach
35 chr3:52864000-52866000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr3:52864000-52866400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr3:52864200-52866200 Enhancers NHEK skin
38 chr3:52864400-52866000 Enhancers HMEC breast
39 chr3:52864400-52866200 Enhancers Placenta Placenta
40 chr3:52864400-52866400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr3:52864400-52866400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr3:52864400-52866600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr3:52864400-52866600 Enhancers NHLF lung
44 chr3:52864400-52867200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr3:52864400-52875800 Strong transcription Primary neutrophils fromperipheralblood blood
46 chr3:52864600-52865800 Enhancers Fetal Thymus thymus
47 chr3:52864600-52866200 Enhancers NH-A brain
48 chr3:52864600-52866600 Enhancers Fetal Adrenal Gland Adrenal Gland
49 chr3:52864600-52866800 Enhancers HSMMtube muscle
50 chr3:52864600-52867000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015