The 2.0 version of rSNPBase

Variant report

Variant rs6776862
Chromosome Location chr3:52891774-52891775
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52870000-52901000 Weak transcription Fetal Brain Male brain
2 chr3:52873400-52892000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
3 chr3:52879800-52894800 Weak transcription HSMM muscle
4 chr3:52883400-52894200 Weak transcription HSMMtube muscle
5 chr3:52883400-52894600 Weak transcription Hela-S3 cervix
6 chr3:52883800-52894400 Weak transcription Psoas Muscle Psoas
7 chr3:52884000-52898200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr3:52884000-52907400 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr3:52884200-52893000 Weak transcription HUES6 Cell Line embryonic stem cell
10 chr3:52884400-52893000 Weak transcription Small Intestine intestine
11 chr3:52885400-52899600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr3:52886200-52907800 Weak transcription NHLF lung
13 chr3:52886400-52894200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr3:52886600-52894400 Weak transcription Esophagus oesophagus
15 chr3:52886600-52894400 Weak transcription Gastric stomach
16 chr3:52886600-52894600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr3:52886600-52894600 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr3:52886600-52895000 Weak transcription Brain Cingulate Gyrus brain
19 chr3:52886600-52897600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr3:52886600-52897600 Weak transcription Fetal Intestine Small intestine
21 chr3:52886600-52897800 Weak transcription H9 Cell Line embryonic stem cell
22 chr3:52886600-52898200 Weak transcription Placenta Amnion Placenta Amnion
23 chr3:52886600-52899800 Weak transcription Dnd41 blood
24 chr3:52886600-52907600 Weak transcription Brain Hippocampus Middle brain
25 chr3:52886600-52907800 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr3:52886600-52908600 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr3:52886600-52911000 Weak transcription Primary B cells from cord blood blood
28 chr3:52886600-52920000 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr3:52886600-52930200 Weak transcription Colonic Mucosa Colon
30 chr3:52886800-52891800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr3:52886800-52893600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr3:52886800-52894400 Weak transcription Placenta Placenta
33 chr3:52886800-52894600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr3:52886800-52894800 Weak transcription Brain Angular Gyrus brain
35 chr3:52886800-52900400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr3:52886800-52907600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr3:52887000-52898000 Weak transcription Duodenum Mucosa Duodenum
38 chr3:52887000-52898600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr3:52887000-52919400 Weak transcription Fetal Brain Female brain
40 chr3:52887000-52926400 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr3:52887400-52891800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr3:52887400-52894400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr3:52887600-52894200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr3:52887600-52894200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr3:52887600-52894600 Weak transcription Fetal Muscle Trunk muscle
46 chr3:52887600-52898000 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr3:52887800-52923200 Weak transcription Brain Germinal Matrix brain
48 chr3:52888000-52894400 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr3:52888000-52898000 Weak transcription Primary B cells from peripheral blood blood
50 chr3:52888000-52900000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015