The 2.0 version of rSNPBase

Variant report

Variant rs59838592
Chromosome Location chr3:53002869-53002870
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52954000-53012200 Weak transcription Esophagus oesophagus
2 chr3:52954200-53012200 Weak transcription Pancreas Pancrea
3 chr3:52962400-53007000 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr3:52962400-53012400 Weak transcription Adipose Nuclei Adipose
5 chr3:52964600-53012200 Weak transcription Fetal Muscle Leg muscle
6 chr3:52965000-53039800 Weak transcription Left Ventricle heart
7 chr3:52965600-53008200 Weak transcription GM12878-XiMat blood
8 chr3:52969000-53008000 Weak transcription Colon Smooth Muscle Colon
9 chr3:52975000-53008000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr3:52977600-53017000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr3:52984400-53006000 Weak transcription Fetal Heart heart
12 chr3:52984600-53003000 Weak transcription Brain Inferior Temporal Lobe brain
13 chr3:52986400-53012200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr3:52986800-53006200 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr3:52987000-53003200 Weak transcription Fetal Adrenal Gland Adrenal Gland
16 chr3:52987200-53017400 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr3:52987400-53004600 Weak transcription Stomach Smooth Muscle stomach
18 chr3:52987600-53003600 Weak transcription Primary T cells fromperipheralblood blood
19 chr3:52987600-53005800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr3:52987600-53009400 Weak transcription Placenta Placenta
21 chr3:52987600-53014200 Weak transcription Fetal Thymus thymus
22 chr3:52987600-53014200 Weak transcription Thymus Thymus
23 chr3:52987800-53004600 Weak transcription Fetal Muscle Trunk muscle
24 chr3:52987800-53017000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr3:52987800-53017000 Weak transcription Monocytes-CD14+_RO01746 blood
26 chr3:52988000-53003000 Weak transcription Primary T helper cells PMA-I stimulated --
27 chr3:52988000-53004800 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr3:52988000-53014200 Weak transcription Primary T cells from cord blood blood
29 chr3:52992000-53003400 Weak transcription Primary B cells from peripheral blood blood
30 chr3:52992000-53015800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr3:52992200-53005600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr3:52993800-53016800 Weak transcription Primary B cells from cord blood blood
33 chr3:52995200-53007000 Weak transcription Right Ventricle heart
34 chr3:52997200-53008200 Weak transcription A549 lung
35 chr3:52998600-53004400 Weak transcription Fetal Stomach stomach
36 chr3:52999000-53008200 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr3:52999800-53003200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr3:53000800-53003400 Strong transcription Dnd41 blood
39 chr3:53001200-53003600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr3:53001400-53003400 Strong transcription Primary T helper cells fromperipheralblood blood
41 chr3:53001400-53008000 Weak transcription Osteobl bone
42 chr3:53001800-53003400 Strong transcription Primary hematopoietic stem cells short term culture blood
43 chr3:53001800-53008800 Weak transcription Brain Substantia Nigra brain
44 chr3:53002000-53004000 Strong transcription Fetal Intestine Large intestine
45 chr3:53002000-53017600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr3:53002200-53005000 Weak transcription Brain Angular Gyrus brain
47 chr3:53002400-53005400 Weak transcription Pancreatic Islets Pancreatic Islet
48 chr3:53002400-53007800 Weak transcription Hela-S3 cervix
49 chr3:53002400-53012000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr3:53002400-53013400 Weak transcription Liver Liver

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Last update: Aug 31, 2015