Variant report

Variant	rs72965381
Chromosome Location	chr3:53100589-53100590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53099455..53102184-chr3:53105815..53107465,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs28696085	0.84[ASN][1000 genomes]
rs28719645	0.84[ASN][1000 genomes]
rs3806693	0.84[ASN][1000 genomes]
rs55794978	0.84[ASN][1000 genomes]
rs55885034	0.84[ASN][1000 genomes]
rs56665986	0.92[AFR][1000 genomes]
rs56835905	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs56895623	0.93[AFR][1000 genomes]
rs57273027	0.84[AFR][1000 genomes]
rs57465047	0.89[AFR][1000 genomes]
rs57561909	0.92[AFR][1000 genomes]
rs57654423	0.86[AFR][1000 genomes]
rs57940327	0.84[ASN][1000 genomes]
rs58249114	0.93[AFR][1000 genomes]
rs58309671	0.84[ASN][1000 genomes]
rs58840385	0.84[ASN][1000 genomes]
rs58888768	0.89[AFR][1000 genomes]
rs59224641	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs59515578	0.84[ASN][1000 genomes]
rs59838592	0.95[AFR][1000 genomes]
rs60648378	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs60744886	0.84[ASN][1000 genomes]
rs61285888	0.84[ASN][1000 genomes]
rs61324750	0.86[AFR][1000 genomes]
rs61331336	0.82[AFR][1000 genomes]
rs61437303	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs61438885	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6798309	0.92[AFR][1000 genomes]
rs6798669	0.93[AFR][1000 genomes]
rs72959475	0.84[AFR][1000 genomes]
rs72959477	0.84[AFR][1000 genomes]
rs72959478	0.87[AFR][1000 genomes]
rs72959479	0.84[AFR][1000 genomes]
rs72959482	0.84[AFR][1000 genomes]
rs72959487	0.84[AFR][1000 genomes]
rs72959494	0.86[AFR][1000 genomes]
rs72959499	0.87[AFR][1000 genomes]
rs72961704	0.84[AFR][1000 genomes]
rs72961705	0.86[AFR][1000 genomes]
rs72961708	0.86[AFR][1000 genomes]
rs72961724	0.89[AFR][1000 genomes]
rs72961730	0.89[AFR][1000 genomes]
rs72961733	0.89[AFR][1000 genomes]
rs72961742	0.92[AFR][1000 genomes]
rs72961752	0.92[AFR][1000 genomes]
rs72965340	0.93[AFR][1000 genomes]
rs72965345	0.84[ASN][1000 genomes]
rs72965348	0.93[AFR][1000 genomes]
rs72965350	0.84[ASN][1000 genomes]
rs72965354	0.84[ASN][1000 genomes]
rs72965358	0.97[AFR][1000 genomes]
rs72965359	0.93[AFR][1000 genomes]
rs72965361	0.84[ASN][1000 genomes]
rs72965362	0.84[ASN][1000 genomes]
rs72965366	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72965370	0.95[AFR][1000 genomes]
rs7618417	0.97[AFR][1000 genomes]
rs7628501	0.84[ASN][1000 genomes]
rs7631487	0.84[ASN][1000 genomes]
rs9819608	0.84[ASN][1000 genomes]
rs9822686	0.84[ASN][1000 genomes]
rs9852646	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876800	chr3:53038786-53113762	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53098400-53106000	Weak transcription	Spleen	Spleen
2	chr3:53099600-53101800	Weak transcription	Fetal Intestine Small	intestine
3	chr3:53100200-53103600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:53100400-53101200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:53100400-53105800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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