The 2.0 version of rSNPBase

Variant report

Variant rs28696085
Chromosome Location chr3:53043334-53043335
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53018000-53044200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr3:53018200-53045200 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr3:53019000-53057200 Weak transcription Primary T cells fromperipheralblood blood
4 chr3:53019600-53056400 Weak transcription Primary T regulatory cells fromperipheralblood blood
5 chr3:53019800-53044400 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr3:53020600-53057000 Weak transcription Dnd41 blood
7 chr3:53022600-53050400 Weak transcription Primary B cells from cord blood blood
8 chr3:53025600-53061600 Weak transcription Lung lung
9 chr3:53026200-53044200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr3:53027200-53043400 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr3:53027600-53061600 Weak transcription Liver Liver
12 chr3:53027800-53051000 Weak transcription Primary neutrophils fromperipheralblood blood
13 chr3:53028400-53044200 Weak transcription Adipose Nuclei Adipose
14 chr3:53030200-53059400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr3:53030400-53052400 Weak transcription Primary T cells from cord blood blood
16 chr3:53030800-53050400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr3:53032800-53051600 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr3:53033000-53078400 Weak transcription Aorta Aorta
19 chr3:53033200-53044000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr3:53033200-53057000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr3:53033400-53043600 Weak transcription Right Ventricle heart
22 chr3:53033600-53056200 Weak transcription Fetal Stomach stomach
23 chr3:53033800-53045200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
24 chr3:53033800-53052800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
25 chr3:53033800-53053800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr3:53033800-53060400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr3:53033800-53065000 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr3:53037000-53044200 Weak transcription Psoas Muscle Psoas
29 chr3:53037000-53065000 Weak transcription Fetal Intestine Small intestine
30 chr3:53038800-53044000 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr3:53039200-53043800 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr3:53040200-53044200 Weak transcription Left Ventricle heart
33 chr3:53040200-53044200 Weak transcription Pancreas Pancrea
34 chr3:53040400-53044000 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr3:53040800-53065000 Weak transcription Fetal Intestine Large intestine
36 chr3:53041000-53043600 Weak transcription Fetal Heart heart
37 chr3:53041000-53043600 Weak transcription HepG2 liver
38 chr3:53041400-53053600 Weak transcription Fetal Thymus thymus
39 chr3:53043000-53044600 Enhancers Primary B cells from peripheral blood blood
40 chr3:53043000-53046000 Enhancers GM12878-XiMat blood
41 chr3:53043200-53044000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
42 chr3:53043200-53045600 Enhancers Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015