The 2.0 version of rSNPBase

Variant report

Variant rs58309671
Chromosome Location chr3:53053151-53053152
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53019000-53057200 Weak transcription Primary T cells fromperipheralblood blood
2 chr3:53019600-53056400 Weak transcription Primary T regulatory cells fromperipheralblood blood
3 chr3:53020600-53057000 Weak transcription Dnd41 blood
4 chr3:53025600-53061600 Weak transcription Lung lung
5 chr3:53027600-53061600 Weak transcription Liver Liver
6 chr3:53030200-53059400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr3:53033000-53078400 Weak transcription Aorta Aorta
8 chr3:53033200-53057000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr3:53033600-53056200 Weak transcription Fetal Stomach stomach
10 chr3:53033800-53053800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
11 chr3:53033800-53060400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr3:53033800-53065000 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr3:53037000-53065000 Weak transcription Fetal Intestine Small intestine
14 chr3:53040800-53065000 Weak transcription Fetal Intestine Large intestine
15 chr3:53041400-53053600 Weak transcription Fetal Thymus thymus
16 chr3:53043800-53064800 Weak transcription Stomach Mucosa stomach
17 chr3:53044400-53056000 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr3:53044600-53055600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr3:53044600-53065000 Weak transcription Gastric stomach
20 chr3:53045200-53061400 Weak transcription Fetal Heart heart
21 chr3:53045400-53057200 Weak transcription Psoas Muscle Psoas
22 chr3:53045400-53061600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr3:53045600-53057000 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr3:53045600-53057600 Weak transcription Left Ventricle heart
25 chr3:53045800-53061400 Weak transcription HepG2 liver
26 chr3:53046000-53057600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr3:53048400-53058600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr3:53048800-53077800 Weak transcription Stomach Smooth Muscle stomach
29 chr3:53049200-53059800 Weak transcription Pancreas Pancrea
30 chr3:53050600-53057200 Weak transcription Small Intestine intestine
31 chr3:53050600-53062000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr3:53051200-53054400 Enhancers Primary B cells from peripheral blood blood
33 chr3:53051400-53053400 Enhancers Primary monocytes fromperipheralblood blood
34 chr3:53051400-53056600 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr3:53051600-53053200 Enhancers Primary hematopoietic stem cells short term culture blood
36 chr3:53051800-53056800 Weak transcription Primary hematopoietic stem cells blood
37 chr3:53052000-53064800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
38 chr3:53052400-53053200 Enhancers Primary T killer naive cells fromperipheralblood blood
39 chr3:53052400-53054200 Enhancers Primary T helper cells PMA-I stimulated --
40 chr3:53052600-53053200 Enhancers Primary T helper cells fromperipheralblood blood
41 chr3:53052600-53053200 Enhancers Skeletal Muscle Female skeletal muscle
42 chr3:53052600-53053400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
43 chr3:53052800-53054400 Enhancers Primary B cells from cord blood blood
44 chr3:53052800-53056600 Weak transcription Primary T cells from cord blood blood
45 chr3:53052800-53057000 Weak transcription Primary T helper naive cells fromperipheralblood blood
46 chr3:53053000-53053400 Enhancers Primary neutrophils fromperipheralblood blood
47 chr3:53053000-53053600 Enhancers Monocytes-CD14+_RO01746 blood
48 chr3:53053000-53054200 Enhancers GM12878-XiMat blood
49 chr3:53053000-53054400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
50 chr3:53053000-53055200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015