Variant report

Variant	rs57561909
Chromosome Location	chr3:53088426-53088427
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53078502..53082899-chr3:53088396..53093067,6	K562	blood:

Variant related genes	Relation type
ENSG00000163935	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56665986	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56835905	0.85[AFR][1000 genomes]
rs56895623	0.92[AFR][1000 genomes]
rs57273027	0.83[AFR][1000 genomes]
rs57465047	0.87[AFR][1000 genomes]
rs57654423	0.84[AFR][1000 genomes]
rs58249114	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58888768	0.87[AFR][1000 genomes]
rs59224641	0.90[AFR][1000 genomes]
rs59838592	0.93[AFR][1000 genomes]
rs60648378	0.90[AFR][1000 genomes]
rs61324750	0.84[AFR][1000 genomes]
rs61331336	0.80[AFR][1000 genomes]
rs61437303	0.85[AFR][1000 genomes]
rs61438885	0.85[AFR][1000 genomes]
rs6798309	0.90[AFR][1000 genomes]
rs6798669	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959475	0.83[AFR][1000 genomes]
rs72959477	0.83[AFR][1000 genomes]
rs72959478	0.86[AFR][1000 genomes]
rs72959479	0.83[AFR][1000 genomes]
rs72959482	0.83[AFR][1000 genomes]
rs72959487	0.83[AFR][1000 genomes]
rs72959494	0.84[AFR][1000 genomes]
rs72959499	0.86[AFR][1000 genomes]
rs72961704	0.83[AFR][1000 genomes]
rs72961705	0.84[AFR][1000 genomes]
rs72961708	0.84[AFR][1000 genomes]
rs72961724	0.87[AFR][1000 genomes]
rs72961730	0.87[AFR][1000 genomes]
rs72961733	0.87[AFR][1000 genomes]
rs72961742	0.90[AFR][1000 genomes]
rs72961752	0.90[AFR][1000 genomes]
rs72965340	0.92[AFR][1000 genomes]
rs72965348	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72965358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72965359	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72965366	0.85[AFR][1000 genomes]
rs72965370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72965381	0.92[AFR][1000 genomes]
rs7618417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818974	chr3:52966316-53096394	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv876800	chr3:53038786-53113762	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1820544	chr3:53046712-53096394	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv822094	chr3:53059674-53096460	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv590347	chr3:53079048-53088815	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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