Variant report

Variant	rs61324750
Chromosome Location	chr3:52939609-52939610
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs34397833	1.00[AMR][1000 genomes]
rs35981653	1.00[AMR][1000 genomes]
rs56665986	0.84[AFR][1000 genomes]
rs56895623	0.86[AFR][1000 genomes]
rs57273027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57465047	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57561909	0.84[AFR][1000 genomes]
rs57640885	1.00[AMR][1000 genomes]
rs57654423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58249114	0.86[AFR][1000 genomes]
rs58888768	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59224641	0.84[AFR][1000 genomes]
rs59838592	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60207422	1.00[AMR][1000 genomes]
rs60648378	0.84[AFR][1000 genomes]
rs60805548	1.00[AMR][1000 genomes]
rs61331336	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6776862	1.00[AMR][1000 genomes]
rs6798309	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6798669	0.86[AFR][1000 genomes]
rs72954390	1.00[AMR][1000 genomes]
rs72954402	1.00[AMR][1000 genomes]
rs72959475	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959477	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959478	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959479	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959482	0.98[AFR][1000 genomes]
rs72959487	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959499	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961704	0.98[AFR][1000 genomes]
rs72961705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961711	1.00[AMR][1000 genomes]
rs72961724	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961730	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961733	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961742	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961752	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72965340	0.86[AFR][1000 genomes]
rs72965348	0.86[AFR][1000 genomes]
rs72965358	0.89[AFR][1000 genomes]
rs72965359	0.86[AFR][1000 genomes]
rs72965370	0.87[AFR][1000 genomes]
rs72965381	0.86[AFR][1000 genomes]
rs7618417	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52931600-52945000	Weak transcription	Gastric	stomach
2	chr3:52931800-52965400	Weak transcription	Spleen	Spleen
3	chr3:52932000-52940000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:52932000-52941000	Weak transcription	Lung	lung
5	chr3:52932000-52943600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:52932000-52943800	Weak transcription	Pancreas	Pancrea
7	chr3:52932000-52946400	Weak transcription	Esophagus	oesophagus
8	chr3:52932000-52953400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:52932000-52954000	Weak transcription	Small Intestine	intestine
10	chr3:52932000-52964000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:52932000-52970000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:52932000-52978000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:52932200-52940000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:52932200-52940200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:52932200-52940200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr3:52932200-52940800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:52932200-52941000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr3:52932200-52946000	Weak transcription	Colon Smooth Muscle	Colon
19	chr3:52932200-52948600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:52932200-52948800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:52932200-52951400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:52932200-52952800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:52932200-52953600	Weak transcription	Right Ventricle	heart
24	chr3:52932200-52953800	Weak transcription	Ovary	ovary
25	chr3:52932200-52961400	Weak transcription	HSMMtube	muscle
26	chr3:52932200-52961800	Weak transcription	A549	lung
27	chr3:52932200-52963000	Weak transcription	Stomach Mucosa	stomach
28	chr3:52932200-52966400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:52932200-52967800	Weak transcription	HSMM	muscle
30	chr3:52932200-52968600	Weak transcription	Osteobl	bone
31	chr3:52932200-52968800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:52932200-52968800	Weak transcription	Fetal Brain Male	brain
33	chr3:52932400-52940400	Weak transcription	HMEC	breast
34	chr3:52932400-52940800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr3:52932400-52941000	Weak transcription	Colonic Mucosa	Colon
36	chr3:52932400-52941200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:52932400-52943600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:52932400-52943800	Weak transcription	Fetal Stomach	stomach
39	chr3:52932400-52945000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr3:52932400-52946400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr3:52932400-52946400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr3:52932400-52946600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:52932400-52947000	Weak transcription	Fetal Heart	heart
44	chr3:52932400-52948200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr3:52932400-52953000	Weak transcription	Brain Angular Gyrus	brain
46	chr3:52932400-52953400	Weak transcription	Fetal Kidney	kidney
47	chr3:52932400-52968600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:52932400-52968600	Weak transcription	NHDF-Ad	bronchial
49	chr3:52932400-52968800	Weak transcription	NHEK	skin
50	chr3:52935600-52968600	Strong transcription	Dnd41	blood

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