The 2.0 version of rSNPBase

Variant report

Variant rs72959487
Chromosome Location chr3:52920303-52920304
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52886600-52930200 Weak transcription Colonic Mucosa Colon
2 chr3:52887000-52926400 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr3:52887800-52923200 Weak transcription Brain Germinal Matrix brain
4 chr3:52892000-52926400 Weak transcription Rectal Smooth Muscle rectum
5 chr3:52895800-52923800 Weak transcription Brain Cingulate Gyrus brain
6 chr3:52895800-52925200 Weak transcription Esophagus oesophagus
7 chr3:52902200-52925200 Weak transcription Placenta Placenta
8 chr3:52906000-52924400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr3:52908000-52924000 Weak transcription Brain Hippocampus Middle brain
10 chr3:52908000-52924000 Weak transcription Brain Substantia Nigra brain
11 chr3:52908200-52925400 Weak transcription Brain Anterior Caudate brain
12 chr3:52908200-52925400 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr3:52908400-52924400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr3:52908400-52924600 Weak transcription NHLF lung
15 chr3:52908400-52930600 Weak transcription A549 lung
16 chr3:52908600-52924600 Weak transcription Muscle Satellite Cultured Cells --
17 chr3:52908600-52926000 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr3:52909200-52925200 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr3:52909600-52925400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr3:52909800-52925200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr3:52909800-52925400 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr3:52910000-52929400 Weak transcription HMEC breast
23 chr3:52910000-52930200 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr3:52910200-52925400 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr3:52910200-52929800 Weak transcription HUES6 Cell Line embryonic stem cell
26 chr3:52910200-52930000 Weak transcription H9 Cell Line embryonic stem cell
27 chr3:52910200-52930000 Weak transcription HUES64 Cell Line embryonic stem cell
28 chr3:52910200-52930000 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr3:52910400-52924800 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr3:52910400-52930200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr3:52910600-52926400 Weak transcription Primary T helper naive cells fromperipheralblood blood
32 chr3:52911600-52921400 Weak transcription Spleen Spleen
33 chr3:52913200-52926600 Weak transcription K562 blood
34 chr3:52913600-52924600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr3:52913600-52925200 Weak transcription Adipose Nuclei Adipose
36 chr3:52913800-52924200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr3:52914000-52921400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr3:52914000-52924400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
39 chr3:52914200-52920800 Weak transcription Ovary ovary
40 chr3:52914400-52923400 Weak transcription Fetal Intestine Small intestine
41 chr3:52914400-52924000 Weak transcription HepG2 liver
42 chr3:52914600-52924800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr3:52914800-52922200 Weak transcription Fetal Stomach stomach
44 chr3:52914800-52924000 Weak transcription Brain Angular Gyrus brain
45 chr3:52914800-52924400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
46 chr3:52915000-52924600 Weak transcription Primary neutrophils fromperipheralblood blood
47 chr3:52916400-52921400 Weak transcription Gastric stomach
48 chr3:52916400-52930600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
49 chr3:52916600-52924600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr3:52916600-52926000 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015