Variant report

Variant rs6445548
Chromosome Location chr3:52929484-52929485
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52886600-52930200 Weak transcription Colonic Mucosa Colon
2 chr3:52908400-52930600 Weak transcription A549 lung
3 chr3:52910000-52930200 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr3:52910200-52929800 Weak transcription HUES6 Cell Line embryonic stem cell
5 chr3:52910200-52930000 Weak transcription H9 Cell Line embryonic stem cell
6 chr3:52910200-52930000 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr3:52910200-52930000 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr3:52910400-52930200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr3:52916400-52930600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr3:52919200-52930200 Weak transcription Fetal Kidney kidney
11 chr3:52920200-52929800 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr3:52920400-52930600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr3:52920400-52930600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
14 chr3:52920400-52930600 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr3:52921600-52930600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr3:52924000-52930000 Enhancers Brain Substantia Nigra brain
17 chr3:52924200-52930200 Enhancers Primary monocytes fromperipheralblood blood
18 chr3:52924600-52930200 Enhancers Primary neutrophils fromperipheralblood blood
19 chr3:52924800-52929600 Genic enhancers Thymus Thymus
20 chr3:52925200-52929600 Genic enhancers Fetal Thymus thymus
21 chr3:52925400-52929800 Enhancers Brain Anterior Caudate brain
22 chr3:52925400-52929800 Enhancers Brain Inferior Temporal Lobe brain
23 chr3:52925400-52929800 Weak transcription NHEK skin
24 chr3:52925600-52930200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr3:52925600-52930600 Weak transcription Esophagus oesophagus
26 chr3:52926000-52929800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr3:52926000-52930200 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr3:52926200-52930400 Weak transcription Placenta Placenta
29 chr3:52926400-52930000 Weak transcription Fetal Heart heart
30 chr3:52926400-52930200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr3:52926400-52930200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
32 chr3:52926600-52929800 Enhancers Brain Angular Gyrus brain
33 chr3:52926600-52930200 Weak transcription H1 Cell Line embryonic stem cell
34 chr3:52926600-52930200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr3:52926600-52930200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
36 chr3:52926800-52930200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr3:52927400-52930000 Enhancers Liver Liver
38 chr3:52927400-52930000 Weak transcription Rectal Mucosa Donor 29 rectum
39 chr3:52927400-52930200 Enhancers Primary T helper naive cells fromperipheralblood blood
40 chr3:52927400-52930200 Weak transcription K562 blood
41 chr3:52927400-52930600 Enhancers Primary T helper naive cells from peripheral blood blood
42 chr3:52927600-52929600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr3:52927600-52929600 Enhancers Left Ventricle heart
44 chr3:52927600-52930200 Enhancers Duodenum Mucosa Duodenum
45 chr3:52927600-52930400 Enhancers Primary T cells fromperipheralblood blood
46 chr3:52927600-52930600 Enhancers Gastric stomach
47 chr3:52927600-52930600 Enhancers Pancreas Pancrea
48 chr3:52927800-52929600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
49 chr3:52927800-52929600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr3:52927800-52929800 Genic enhancers Fetal Stomach stomach

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