Variant report

Variant	rs9833487
Chromosome Location	chr3:53146732-53146733
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53139091..53142034-chr3:53144665..53147558,2	K562	blood:
2	chr3:52885460..52888242-chr3:53145853..53147781,3	K562	blood:

Variant related genes	Relation type
ENSG00000213533	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12486028	1.00[EUR][1000 genomes]
rs1991567	1.00[EUR][1000 genomes]
rs2336161	1.00[EUR][1000 genomes]
rs2564925	1.00[EUR][1000 genomes]
rs2564927	1.00[EUR][1000 genomes]
rs2564943	1.00[EUR][1000 genomes]
rs2564946	1.00[EUR][1000 genomes]
rs2581814	1.00[EUR][1000 genomes]
rs2710315	1.00[EUR][1000 genomes]
rs2710316	1.00[EUR][1000 genomes]
rs2710327	1.00[EUR][1000 genomes]
rs2710340	1.00[EUR][1000 genomes]
rs4234640	1.00[EUR][1000 genomes]
rs4687685	1.00[EUR][1000 genomes]
rs4687690	1.00[EUR][1000 genomes]
rs61641433	1.00[EUR][1000 genomes]
rs6445548	1.00[EUR][1000 genomes]
rs6795138	1.00[EUR][1000 genomes]
rs6797070	1.00[EUR][1000 genomes]
rs72961745	1.00[EUR][1000 genomes]
rs72961755	1.00[EUR][1000 genomes]
rs72967404	1.00[EUR][1000 genomes]
rs73840215	1.00[AMR][1000 genomes]
rs7629350	1.00[EUR][1000 genomes]
rs7652175	1.00[EUR][1000 genomes]
rs9809279	1.00[AMR][1000 genomes]
rs9815408	1.00[EUR][1000 genomes]
rs9846827	1.00[EUR][1000 genomes]
rs9869545	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590356	chr3:53134098-53170500	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53107800-53151400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:53117800-53147200	Weak transcription	Psoas Muscle	Psoas
3	chr3:53119000-53154200	Weak transcription	Stomach Mucosa	stomach
4	chr3:53122800-53152200	Weak transcription	Small Intestine	intestine
5	chr3:53123200-53148600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr3:53124200-53151600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:53127000-53154200	Weak transcription	Right Atrium	heart
8	chr3:53132000-53148000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr3:53133600-53152600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:53137400-53151400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:53137400-53161600	Strong transcription	Fetal Intestine Small	intestine
12	chr3:53137600-53147800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:53138000-53151000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:53138400-53151400	Weak transcription	Gastric	stomach
15	chr3:53139000-53148200	Weak transcription	HUVEC	blood vessel
16	chr3:53139000-53151200	Weak transcription	Colonic Mucosa	Colon
17	chr3:53139200-53147400	Weak transcription	NHLF	lung
18	chr3:53139200-53147600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:53139200-53151200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:53139200-53151400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr3:53139200-53157400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:53139400-53147800	Weak transcription	Ovary	ovary
23	chr3:53139400-53151200	Weak transcription	Esophagus	oesophagus
24	chr3:53139400-53151400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:53139600-53151400	Weak transcription	Aorta	Aorta
26	chr3:53140400-53147400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:53140600-53147200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:53140800-53149200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:53142800-53161000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:53143000-53149400	Strong transcription	GM12878-XiMat	blood
31	chr3:53143400-53147800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:53143600-53150800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr3:53143600-53151000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:53143600-53151400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr3:53143800-53147800	Strong transcription	Primary B cells from cord blood	blood
36	chr3:53143800-53148200	Weak transcription	HSMMtube	muscle
37	chr3:53144000-53151000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr3:53144200-53147600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:53144200-53148400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr3:53144200-53148600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:53144200-53151000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr3:53144200-53151000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:53144200-53151000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr3:53144400-53147800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:53144400-53147800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr3:53144400-53149600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr3:53144400-53149600	Weak transcription	Fetal Kidney	kidney
48	chr3:53144600-53146800	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:53144600-53147000	Weak transcription	Left Ventricle	heart
50	chr3:53144600-53147200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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