The 2.0 version of rSNPBase

Variant report

Variant rs61641433
Chromosome Location chr3:52918217-52918218
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52886600-52920000 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr3:52886600-52930200 Weak transcription Colonic Mucosa Colon
3 chr3:52887000-52919400 Weak transcription Fetal Brain Female brain
4 chr3:52887000-52926400 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr3:52887800-52923200 Weak transcription Brain Germinal Matrix brain
6 chr3:52891600-52919600 Weak transcription Left Ventricle heart
7 chr3:52892000-52926400 Weak transcription Rectal Smooth Muscle rectum
8 chr3:52895400-52919400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr3:52895800-52923800 Weak transcription Brain Cingulate Gyrus brain
10 chr3:52895800-52925200 Weak transcription Esophagus oesophagus
11 chr3:52902200-52925200 Weak transcription Placenta Placenta
12 chr3:52904000-52918400 Weak transcription Fetal Intestine Large intestine
13 chr3:52904600-52919400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr3:52905000-52919800 Weak transcription Right Ventricle heart
15 chr3:52906000-52924400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr3:52908000-52924000 Weak transcription Brain Hippocampus Middle brain
17 chr3:52908000-52924000 Weak transcription Brain Substantia Nigra brain
18 chr3:52908200-52919000 Weak transcription NHEK skin
19 chr3:52908200-52919600 Weak transcription HSMM muscle
20 chr3:52908200-52925400 Weak transcription Brain Anterior Caudate brain
21 chr3:52908200-52925400 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr3:52908400-52924400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr3:52908400-52924600 Weak transcription NHLF lung
24 chr3:52908400-52930600 Weak transcription A549 lung
25 chr3:52908600-52924600 Weak transcription Muscle Satellite Cultured Cells --
26 chr3:52908600-52926000 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr3:52909200-52919400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr3:52909200-52920000 Weak transcription Liver Liver
29 chr3:52909200-52925200 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr3:52909600-52925400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr3:52909800-52925200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr3:52909800-52925400 Weak transcription Primary T killer naive cells fromperipheralblood blood
33 chr3:52910000-52918800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr3:52910000-52919400 Weak transcription Dnd41 blood
35 chr3:52910000-52929400 Weak transcription HMEC breast
36 chr3:52910000-52930200 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr3:52910200-52920200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr3:52910200-52925400 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr3:52910200-52929800 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr3:52910200-52930000 Weak transcription H9 Cell Line embryonic stem cell
41 chr3:52910200-52930000 Weak transcription HUES64 Cell Line embryonic stem cell
42 chr3:52910200-52930000 Weak transcription iPS-20b Cell Line embryonic stem cell
43 chr3:52910400-52920200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr3:52910400-52924800 Weak transcription Primary T helper naive cells from peripheral blood blood
45 chr3:52910400-52930200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr3:52910600-52926400 Weak transcription Primary T helper naive cells fromperipheralblood blood
47 chr3:52911600-52921400 Weak transcription Spleen Spleen
48 chr3:52912200-52918800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr3:52912400-52919600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr3:52913000-52919600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015