Variant report

Variant rs2336159
Chromosome Location chr3:52882729-52882730
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52854800-52888400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr3:52866000-52884800 Weak transcription HMEC breast
3 chr3:52866200-52885200 Weak transcription NHEK skin
4 chr3:52868000-52883200 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr3:52869800-52884000 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr3:52870000-52901000 Weak transcription Fetal Brain Male brain
7 chr3:52873400-52891600 Strong transcription Primary T cells from cord blood blood
8 chr3:52873400-52892000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
9 chr3:52873600-52889000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr3:52873800-52889000 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr3:52873800-52891400 Strong transcription Primary T regulatory cells fromperipheralblood blood
12 chr3:52874200-52883800 Enhancers Psoas Muscle Psoas
13 chr3:52875800-52885800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr3:52876000-52885800 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr3:52876800-52883600 Weak transcription Aorta Aorta
16 chr3:52877000-52883200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr3:52877000-52885000 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr3:52877000-52885600 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr3:52879000-52883000 Weak transcription Small Intestine intestine
20 chr3:52879600-52882800 Weak transcription Osteobl bone
21 chr3:52879600-52889800 Weak transcription K562 blood
22 chr3:52879800-52888200 Weak transcription Stomach Mucosa stomach
23 chr3:52879800-52894800 Weak transcription HSMM muscle
24 chr3:52880200-52883800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
25 chr3:52880200-52885000 Weak transcription HepG2 liver
26 chr3:52880200-52887200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr3:52880200-52890200 Strong transcription Monocytes-CD14+_RO01746 blood
28 chr3:52880400-52883000 Weak transcription Rectal Smooth Muscle rectum
29 chr3:52880400-52884200 Strong transcription Cortex derived primary cultured neurospheres brain
30 chr3:52880400-52890000 Strong transcription Primary T cells fromperipheralblood blood
31 chr3:52880600-52885200 Weak transcription Colon Smooth Muscle Colon
32 chr3:52880600-52891000 Weak transcription Fetal Heart heart
33 chr3:52880800-52883200 Strong transcription Stomach Smooth Muscle stomach
34 chr3:52880800-52885800 Strong transcription Fetal Adrenal Gland Adrenal Gland
35 chr3:52880800-52886000 Strong transcription Lung lung
36 chr3:52880800-52889800 Weak transcription Pancreatic Islets Pancreatic Islet
37 chr3:52880800-52890000 Strong transcription Primary T helper cells PMA-I stimulated --
38 chr3:52881000-52883000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr3:52881000-52884400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr3:52881000-52885200 Weak transcription Primary hematopoietic stem cells blood
41 chr3:52881000-52886000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr3:52881000-52886200 Strong transcription Brain Germinal Matrix brain
43 chr3:52881000-52886600 Strong transcription Brain Substantia Nigra brain
44 chr3:52881000-52889200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
45 chr3:52881200-52883000 Strong transcription Left Ventricle heart
46 chr3:52881200-52883200 Weak transcription HUVEC blood vessel
47 chr3:52881200-52883600 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr3:52881200-52883600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr3:52881200-52884200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr3:52881200-52884200 Strong transcription Right Ventricle heart

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