The 2.0 version of rSNPBase

Variant report

Variant rs6787916
Chromosome Location chr3:52867715-52867716
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52850200-52868400 Weak transcription Colonic Mucosa Colon
2 chr3:52852200-52869200 Weak transcription Primary T helper naive cells fromperipheralblood blood
3 chr3:52852800-52869200 Weak transcription Primary B cells from cord blood blood
4 chr3:52853000-52868000 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr3:52854200-52874200 Weak transcription H9 Cell Line embryonic stem cell
6 chr3:52854800-52869200 Weak transcription Primary T helper cells fromperipheralblood blood
7 chr3:52854800-52888400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr3:52856000-52875000 Weak transcription Fetal Intestine Large intestine
9 chr3:52856400-52868200 Weak transcription Fetal Lung lung
10 chr3:52857000-52868600 Weak transcription Primary B cells from peripheral blood blood
11 chr3:52858000-52867800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr3:52858000-52868400 Weak transcription Brain Germinal Matrix brain
13 chr3:52858800-52868800 Weak transcription Primary T regulatory cells fromperipheralblood blood
14 chr3:52858800-52868800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr3:52858800-52869200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr3:52859400-52869000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr3:52860200-52869000 Weak transcription Fetal Intestine Small intestine
18 chr3:52861200-52868800 Weak transcription Lung lung
19 chr3:52862000-52869200 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr3:52862000-52882600 Weak transcription Placenta Amnion Placenta Amnion
21 chr3:52863200-52872600 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr3:52864400-52875800 Strong transcription Primary neutrophils fromperipheralblood blood
23 chr3:52865000-52867800 Enhancers Psoas Muscle Psoas
24 chr3:52865000-52869400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr3:52865200-52869000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr3:52865600-52874200 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr3:52865600-52875200 Weak transcription Dnd41 blood
28 chr3:52865800-52869000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr3:52865800-52878600 Weak transcription Small Intestine intestine
30 chr3:52866000-52868200 Weak transcription Brain Angular Gyrus brain
31 chr3:52866000-52868400 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr3:52866000-52869800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr3:52866000-52884800 Weak transcription HMEC breast
34 chr3:52866200-52867800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
35 chr3:52866200-52868200 Weak transcription Ovary ovary
36 chr3:52866200-52868400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr3:52866200-52868600 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle
38 chr3:52866200-52869000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr3:52866200-52869200 Weak transcription Placenta Placenta
40 chr3:52866200-52869600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr3:52866200-52870200 Weak transcription Gastric stomach
42 chr3:52866200-52872600 Weak transcription Duodenum Mucosa Duodenum
43 chr3:52866200-52872600 Weak transcription Esophagus oesophagus
44 chr3:52866200-52885200 Weak transcription NHEK skin
45 chr3:52866400-52867800 Weak transcription Left Ventricle heart
46 chr3:52866400-52867800 Weak transcription Right Ventricle heart
47 chr3:52866400-52868000 Strong transcription Fetal Stomach stomach
48 chr3:52866400-52868400 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr3:52866400-52868400 Weak transcription Rectal Smooth Muscle rectum
50 chr3:52866400-52868600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin

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Last update: Aug 31, 2015