Variant report

Variant rs2710319
Chromosome Location chr3:52853087-52853088
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52844000-52854000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr3:52844200-52856600 Weak transcription Primary T cells from cord blood blood
3 chr3:52844400-52857200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
4 chr3:52844600-52856800 Weak transcription Fetal Intestine Small intestine
5 chr3:52844600-52857600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr3:52845800-52854200 Weak transcription Brain Cingulate Gyrus brain
7 chr3:52846000-52853200 Weak transcription Thymus Thymus
8 chr3:52846400-52860800 Weak transcription Esophagus oesophagus
9 chr3:52846800-52857000 Weak transcription Aorta Aorta
10 chr3:52847000-52857400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr3:52847200-52861200 Genic enhancers Liver Liver
12 chr3:52847400-52857000 Weak transcription Brain Hippocampus Middle brain
13 chr3:52847600-52865000 Weak transcription Psoas Muscle Psoas
14 chr3:52847800-52854600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr3:52848400-52853400 Weak transcription Brain Inferior Temporal Lobe brain
16 chr3:52848400-52865800 Weak transcription Ovary ovary
17 chr3:52848600-52853800 Weak transcription Right Ventricle heart
18 chr3:52848800-52854200 Weak transcription Brain Substantia Nigra brain
19 chr3:52849800-52853200 Strong transcription Skeletal Muscle Male skeletal muscle
20 chr3:52849800-52853800 Strong transcription Skeletal Muscle Female skeletal muscle
21 chr3:52850200-52868400 Weak transcription Colonic Mucosa Colon
22 chr3:52850600-52857800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
23 chr3:52850600-52864200 Strong transcription Stomach Smooth Muscle stomach
24 chr3:52850800-52854000 Weak transcription Primary neutrophils fromperipheralblood blood
25 chr3:52850800-52865400 Strong transcription Fetal Stomach stomach
26 chr3:52851000-52856800 Weak transcription Fetal Brain Female brain
27 chr3:52851200-52855400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
28 chr3:52851400-52853200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr3:52851600-52853800 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr3:52851600-52863400 Strong transcription Breast Myoepithelial Primary Cells Breast
31 chr3:52851800-52853400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr3:52851800-52855200 Strong transcription Brain Anterior Caudate brain
33 chr3:52851800-52856800 Weak transcription Lung lung
34 chr3:52851800-52858000 Weak transcription Placenta Placenta
35 chr3:52852200-52869200 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr3:52852400-52853400 Weak transcription Fetal Muscle Leg muscle
37 chr3:52852400-52853600 Genic enhancers Fetal Muscle Trunk muscle
38 chr3:52852400-52854200 Genic enhancers Fetal Thymus thymus
39 chr3:52852400-52854400 Enhancers ES-I3 Cell Line embryonic stem cell
40 chr3:52852600-52853400 Genic enhancers Spleen Spleen
41 chr3:52852600-52854000 Weak transcription Pancreas Pancrea
42 chr3:52852800-52854800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr3:52852800-52869200 Weak transcription Primary B cells from cord blood blood
44 chr3:52853000-52853200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
45 chr3:52853000-52853600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr3:52853000-52854000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr3:52853000-52854400 Enhancers H1 Cell Line embryonic stem cell
48 chr3:52853000-52854400 Strong transcription Brain Germinal Matrix brain
49 chr3:52853000-52857000 Weak transcription Gastric stomach
50 chr3:52853000-52857000 Enhancers HepG2 liver

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