The 2.0 version of rSNPBase

Variant report

Variant rs2276819
Chromosome Location chr3:52864888-52864889
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52847600-52865000 Weak transcription Psoas Muscle Psoas
2 chr3:52848400-52865800 Weak transcription Ovary ovary
3 chr3:52850200-52868400 Weak transcription Colonic Mucosa Colon
4 chr3:52850800-52865400 Strong transcription Fetal Stomach stomach
5 chr3:52852200-52869200 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr3:52852800-52869200 Weak transcription Primary B cells from cord blood blood
7 chr3:52853000-52868000 Weak transcription Primary hematopoietic stem cells short term culture blood
8 chr3:52854200-52874200 Weak transcription H9 Cell Line embryonic stem cell
9 chr3:52854800-52869200 Weak transcription Primary T helper cells fromperipheralblood blood
10 chr3:52854800-52888400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr3:52855200-52865400 Weak transcription Brain Substantia Nigra brain
12 chr3:52855600-52865400 Weak transcription Colon Smooth Muscle Colon
13 chr3:52856000-52865400 Weak transcription Rectal Smooth Muscle rectum
14 chr3:52856000-52875000 Weak transcription Fetal Intestine Large intestine
15 chr3:52856200-52865600 Weak transcription Left Ventricle heart
16 chr3:52856400-52868200 Weak transcription Fetal Lung lung
17 chr3:52857000-52868600 Weak transcription Primary B cells from peripheral blood blood
18 chr3:52857800-52865400 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr3:52858000-52867800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr3:52858000-52868400 Weak transcription Brain Germinal Matrix brain
21 chr3:52858200-52865400 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr3:52858400-52865400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr3:52858400-52865400 Weak transcription Brain Angular Gyrus brain
24 chr3:52858400-52866800 Weak transcription Fetal Brain Female brain
25 chr3:52858400-52867200 Weak transcription Primary T cells fromperipheralblood blood
26 chr3:52858400-52867600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr3:52858600-52865600 Weak transcription Brain Hippocampus Middle brain
28 chr3:52858600-52866800 Weak transcription Monocytes-CD14+_RO01746 blood
29 chr3:52858600-52867000 Weak transcription Primary monocytes fromperipheralblood blood
30 chr3:52858800-52866800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr3:52858800-52868800 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr3:52858800-52868800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr3:52858800-52869200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr3:52859000-52865200 Weak transcription Brain Cingulate Gyrus brain
35 chr3:52859200-52865400 Weak transcription Brain Anterior Caudate brain
36 chr3:52859400-52869000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr3:52860200-52869000 Weak transcription Fetal Intestine Small intestine
38 chr3:52860400-52865400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr3:52861000-52865000 Weak transcription Brain Inferior Temporal Lobe brain
40 chr3:52861200-52865600 Weak transcription Esophagus oesophagus
41 chr3:52861200-52866400 Weak transcription Primary T cells from cord blood blood
42 chr3:52861200-52868800 Weak transcription Lung lung
43 chr3:52861600-52865000 Genic enhancers Skeletal Muscle Female skeletal muscle
44 chr3:52861800-52865400 Weak transcription Spleen Spleen
45 chr3:52862000-52865000 Weak transcription Muscle Satellite Cultured Cells --
46 chr3:52862000-52865200 Genic enhancers Skeletal Muscle Male skeletal muscle
47 chr3:52862000-52869200 Weak transcription ES-I3 Cell Line embryonic stem cell
48 chr3:52862000-52882600 Weak transcription Placenta Amnion Placenta Amnion
49 chr3:52862400-52865200 Weak transcription A549 lung
50 chr3:52862800-52865000 Strong transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015