The 2.0 version of rSNPBase

Variant report

Variant rs57430179
Chromosome Location chr3:52911413-52911414
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52886600-52920000 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr3:52886600-52930200 Weak transcription Colonic Mucosa Colon
3 chr3:52887000-52919400 Weak transcription Fetal Brain Female brain
4 chr3:52887000-52926400 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr3:52887800-52923200 Weak transcription Brain Germinal Matrix brain
6 chr3:52891600-52919600 Weak transcription Left Ventricle heart
7 chr3:52892000-52926400 Weak transcription Rectal Smooth Muscle rectum
8 chr3:52895400-52919400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr3:52895800-52923800 Weak transcription Brain Cingulate Gyrus brain
10 chr3:52895800-52925200 Weak transcription Esophagus oesophagus
11 chr3:52900000-52912800 Weak transcription Primary B cells from peripheral blood blood
12 chr3:52900600-52912200 Weak transcription Fetal Muscle Leg muscle
13 chr3:52900800-52912400 Weak transcription Fetal Muscle Trunk muscle
14 chr3:52900800-52912800 Weak transcription Fetal Intestine Small intestine
15 chr3:52900800-52913000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr3:52901800-52912800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr3:52902200-52925200 Weak transcription Placenta Placenta
18 chr3:52904000-52918400 Weak transcription Fetal Intestine Large intestine
19 chr3:52904400-52912800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr3:52904600-52919400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr3:52904800-52912600 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr3:52904800-52912800 Weak transcription Primary hematopoietic stem cells blood
23 chr3:52905000-52919800 Weak transcription Right Ventricle heart
24 chr3:52906000-52924400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr3:52908000-52912200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr3:52908000-52912800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr3:52908000-52915800 Weak transcription Colon Smooth Muscle Colon
28 chr3:52908000-52916200 Weak transcription Aorta Aorta
29 chr3:52908000-52924000 Weak transcription Brain Hippocampus Middle brain
30 chr3:52908000-52924000 Weak transcription Brain Substantia Nigra brain
31 chr3:52908200-52912800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr3:52908200-52913200 Weak transcription Adipose Nuclei Adipose
33 chr3:52908200-52919000 Weak transcription NHEK skin
34 chr3:52908200-52919600 Weak transcription HSMM muscle
35 chr3:52908200-52925400 Weak transcription Brain Anterior Caudate brain
36 chr3:52908200-52925400 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr3:52908400-52924400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr3:52908400-52924600 Weak transcription NHLF lung
39 chr3:52908400-52930600 Weak transcription A549 lung
40 chr3:52908600-52912600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr3:52908600-52913400 Weak transcription Brain Angular Gyrus brain
42 chr3:52908600-52916800 Weak transcription Osteobl bone
43 chr3:52908600-52924600 Weak transcription Muscle Satellite Cultured Cells --
44 chr3:52908600-52926000 Weak transcription Pancreatic Islets Pancreatic Islet
45 chr3:52909200-52919400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr3:52909200-52920000 Weak transcription Liver Liver
47 chr3:52909200-52925200 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr3:52909600-52912800 Weak transcription K562 blood
49 chr3:52909600-52925400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr3:52909800-52912400 Weak transcription HepG2 liver

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Last update: Aug 31, 2015