The 2.0 version of rSNPBase

Variant report

Variant rs9869545
Chromosome Location chr3:53121666-53121667
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53107400-53123200 Weak transcription Lung lung
2 chr3:53107600-53123200 Weak transcription Right Ventricle heart
3 chr3:53107600-53123400 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr3:53107600-53133600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr3:53107800-53122000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr3:53107800-53122200 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr3:53107800-53123000 Weak transcription Placenta Placenta
8 chr3:53107800-53123200 Weak transcription Primary hematopoietic stem cells blood
9 chr3:53107800-53123200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr3:53107800-53123600 Weak transcription Brain Germinal Matrix brain
11 chr3:53107800-53123800 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr3:53107800-53126000 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr3:53107800-53134000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr3:53107800-53151400 Weak transcription iPS-15b Cell Line embryonic stem cell
15 chr3:53108000-53123200 Weak transcription Primary T cells fromperipheralblood blood
16 chr3:53108000-53123200 Weak transcription Colonic Mucosa Colon
17 chr3:53108000-53123200 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr3:53108000-53123400 Weak transcription Adipose Nuclei Adipose
19 chr3:53108000-53123800 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr3:53108200-53123400 Weak transcription GM12878-XiMat blood
21 chr3:53109200-53123200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr3:53109600-53123600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr3:53116200-53123600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr3:53117600-53130800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
25 chr3:53117800-53123200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr3:53117800-53147200 Weak transcription Psoas Muscle Psoas
27 chr3:53118000-53121800 Strong transcription Thymus Thymus
28 chr3:53118000-53125200 Weak transcription Colon Smooth Muscle Colon
29 chr3:53118000-53125400 Strong transcription Monocytes-CD14+_RO01746 blood
30 chr3:53118200-53123200 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr3:53118200-53123400 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr3:53118200-53123600 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr3:53118200-53123800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr3:53118200-53129800 Weak transcription Fetal Brain Male brain
35 chr3:53118400-53122000 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr3:53118400-53123200 Weak transcription Muscle Satellite Cultured Cells --
37 chr3:53118400-53123200 Weak transcription Duodenum Mucosa Duodenum
38 chr3:53118400-53123200 Weak transcription Rectal Smooth Muscle rectum
39 chr3:53118400-53123400 Weak transcription Fetal Brain Female brain
40 chr3:53118400-53123800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr3:53118400-53125200 Strong transcription Primary monocytes fromperipheralblood blood
42 chr3:53118600-53123200 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr3:53118600-53124200 Weak transcription HSMMtube muscle
44 chr3:53118600-53135200 Weak transcription NH-A brain
45 chr3:53118800-53122000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr3:53118800-53123400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr3:53118800-53123600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr3:53118800-53123600 Weak transcription Brain Cingulate Gyrus brain
49 chr3:53118800-53123800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr3:53118800-53123800 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015